Evidence map›Paper›PMID 27824107›Full record

ArticleScientific reports2016

Structural changes induced by acidic pH in human apolipoprotein B-100.

José A Fernández-Higuero, Asier Benito-Vicente, Aitor Etxebarria, José Carlos G Milicua, Helena Ostolaza, José L R Arrondo, Cesar Martín

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Molecular modeling of LDLR aids interpretation of genomic variants.Journal of molecular medicine (Berlin, Germany) · 2019
    Article
  5. Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

José A Fernández-HigueroBiofisika Institute (UPV/EHU, CSIC), University of the Basque Country, UPV/EHU, Spain, Apdo. 644, 48080 Bilbao, Spain.
Asier Benito-VicenteBiofisika Institute (UPV/EHU, CSIC), University of the Basque Country, UPV/EHU, Spain, Apdo. 644, 48080 Bilbao, Spain.
Aitor EtxebarriaBiofisika Institute (UPV/EHU, CSIC), University of the Basque Country, UPV/EHU, Spain, Apdo. 644, 48080 Bilbao, Spain.
José Carlos G MilicuaDpt. Biochemistry and Molecular Biology, University of the Basque Country, UPV/EHU, Spain, Apdo. 644, 48080 Bilbao, Spain.
Helena OstolazaBiofisika Institute (UPV/EHU, CSIC), University of the Basque Country, UPV/EHU, Spain, Apdo. 644, 48080 Bilbao, Spain.
José L R ArrondoBiofisika Institute (UPV/EHU, CSIC), University of the Basque Country, UPV/EHU, Spain, Apdo. 644, 48080 Bilbao, Spain.
Cesar MartínBiofisika Institute (UPV/EHU, CSIC), University of the Basque Country, UPV/EHU, Spain, Apdo. 644, 48080 Bilbao, Spain.
Biofisika · ESUniversity of the Basque Country · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Acidification in the endosome causes lipoprotein release by promoting a conformational change in the LDLR allowing its recycling and degradation of LDL. Notwithstanding conformational changes occurring in the LDLR have expanded considerably, structural changes occurring in LDL particles have not been fully explored yet. The objectives of the present work were to study structural changes occurring in apoB100 by infrared spectroscopy (IR) and also LDL size and morphology by dynamic light scattering (DLS) and electron microscopy (EM) at both pH 7.4 and 5.0. We determined by IR that pH acidification from 7.4 to 5.0, resembling that occurring within endosomal environment, induces a huge reversible structural rearrangement of apoB100 that is characterized by a reduction of beta-sheet content in favor of alpha-helix structures. Data obtained from DLS and EM showed no appreciable differences in size and morphology of LDL. These structural changes observed in apoB100, which are likely implied in particle release from lipoprotein receptor, also compromise the apoprotein stability what would facilitate LDL degradation. In conclusion, the obtained results reveal a more dynamic picture of the LDL/LDLR dissociation process than previously perceived and provide new structural insights into LDL/LDLR interactions than can occur at endosomal low-pH milieu.

Indexed as

Apolipoprotein B-100Dynamic Light ScatteringEndosomesHumansHydrogen-Ion ConcentrationLipoproteins, LDLMicroscopy, ElectronModels, MolecularProtein BindingProtein StabilityProtein Structure, SecondaryAPOB protein, humanApolipoprotein B-100Lipoproteins, LDL

Identifiers

PMID27824107
PMCPMC5099883
OpenAlexW2551087191

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.