ArticleScientific reports2016
Transcriptome analysis uncovers key regulatory and metabolic aspects of soybean embryonic axes during germination.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.
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38 citing papers in PubMed, 105 citations in OpenAlex.
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- Tissue- and Condition-Specific Biosynthesis of Ascorbic Acid inInternational journal of molecular sciences · 2025Article
- Effects of seasonal climates and MIPS1 mutations on soybean germination through multi-omics analysis.BMC plant biology · 2024Article
- Decoding the Transcriptomics of Oil Palm Seed Germination.Plants (Basel, Switzerland) · 2024Article
- The cap-binding complex modulates ABA-responsive transcript splicing during germination in barley (Hordeum vulgare).Scientific reports · 2024Article
- Morpho-Physiochemical Indices and Transcriptome Analysis Reveal the Role of Glucosinolate and Erucic Acid in Response to Drought Stress during Seed Germination of Rapeseed.International journal of molecular sciences · 2024Article
- Ethrel-induced release of fresh seed dormancy causes remodelling of amylase activity, proteomics, phytohormone and fatty acid profile of groundnutPhysiology and molecular biology of plants : an international journal of functional plant biology · 2023Article
- Enhancement of osmotic stress tolerance in soybean seed germination by bacterial bioactive extracts.PloS one · 2023Article
- Transcripts Expressed during GerminationPlants (Basel, Switzerland) · 2022Article
- Comparative Transcriptome Profiling Analysis Reveals the Adaptive Molecular Mechanism of Yellow-Green Leaf inFrontiers in plant science · 2022Article
- Carrot (Frontiers in plant science · 2022Article
- Genome-wide identification of PME genes, evolution and expression analyses in soybean (Glycine max L.).BMC plant biology · 2021Article
- Nutritional evaluation and transcriptome analyses of short-time germinated seeds in soybean (Glycine max L. Merri.).Scientific reports · 2021Article
- Hydro-Electro Hybrid Priming Promotes Carrot (International journal of molecular sciences · 2021Article
- Transcriptome analysis of Cinnamomum migao seed germination in medicinal plants of Southwest China.BMC plant biology · 2021Article
- Effects of germinating temperature and time on metabolite profiles of sunflower (Food science & nutrition · 2021Article
- Identification and molecular characterization of miRNAs and their target genes associated with seed development through small RNA sequencing in chickpea.Functional & integrative genomics · 2021Article
- Genome-Wide Analysis of thePlants (Basel, Switzerland) · 2021Article
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Authors and funding
6 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Soybean (Glycine max) is a major legume crop worldwide, providing a critical source of protein and oil. The release of the soybean genome fuelled several transcriptome projects comprising multiple developmental stages and environmental conditions. Nevertheless, the global transcriptional patterns of embryonic axes during germination remain unknown. Here we report the analysis of ~1.58 billion RNA-Seq reads from soybean embryonic axes at five germination stages. Our results support the early activation of processes that are critical for germination, such as glycolysis, Krebs cycle and cell wall remodelling. Strikingly, only 3 hours after imbibition there is a preferential up-regulation of protein kinases and transcription factors, particularly from the LOB domain family, implying that transcriptional and post-transcriptional regulation play major roles early after imbibition. Lipid mobilization and glyoxylate pathways are also transcriptionally active in the embryonic axes, indicating that the local catabolism of oil reserves in the embryonic axes contributes to energy production during germination. We also present evidence supporting abscisic acid inactivation and the up-regulation of gibberellin, ethylene and brassinosteroid pathways. Further, there is a remarkable differential activation of paralogous genes in these hormone signalling pathways. Taken together, our results provide insights on the regulation and biochemistry of soybean germination.
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