ArticleNature communications2016
Genome sequence and analysis of the Japanese morning glory Ipomoea nil.
Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers, 1 of them a synthesis that pooled it.
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Who cites it
79 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Exploring and exploiting genetics and genomics for sweetpotato improvement: Status and perspectives.Plant communications · 2022Pooled it
- Ectopic expression of the flavonoid 3',5'-hydroxylase gene in Ipomoea nil induces the accumulation of delphinidin-based anthocyanins in the petals and inhibits their opening.BMC plant biology · 2026Article
- Transposon-colonized intron gain follows parasitism-mediated horizontal transfer of a cytochrome P450 gene.Plant physiology · 2026Article
- Photosynthetic activity in the heterotrophic plant genus Cuscuta (Convolvulaceae) is modulated by phylogeny and ontogeny.Annals of botany · 2026Article
- Diploid chromosome-level genome assembly of the Amazonian endemic morning glory Ipomoea cavalcantei D.F. Austin.Scientific data · 2026Article
- Detection and validation of QTLs for flowering time in morning glory.Breeding science · 2025Article
- Chromosome level assembly and annotation of Cuscuta campestris Yunck. ("field dodder"), a model parasitic plant.G3 (Bethesda, Md.) · 2025Article
- Beyond IbMYB1: Identification and Characterization of Two Additional Anthocyanin MYB Activators, IbMYB2 and IbMYB3, in Sweetpotato.Plants (Basel, Switzerland) · 2025Article
- Predicting Fitness-Related Traits Using Gene Expression and Machine Learning.Genome biology and evolution · 2025Article
- Evolutionary analysis of DELLA proteins in sweet potato and related species reveals their roles in development and stress responses.Frontiers in plant science · 2025Article
- Comparative analysis of the GATA transcription factors in sevenFrontiers in plant science · 2025Article
- Comparative analysis of the LEA gene family in seven Ipomoea species, focuses on sweet potato (Ipomoea batatas L.).BMC plant biology · 2024Article
- Advancements in plant transformation: from traditional methods to cutting-edge techniques and emerging model species.Plant cell reports · 2024Review
- Chromosomal Localization and Diversity Analysis of 5S and 18S Ribosomal DNA in 13 Species from the GenusGenes · 2024Article
- ACRE, a class of AP2/ERF transcription factors, activates the expression of sweet potato ß-amylase and sporamin genes through the sugar-responsible element CMSRE-1.Plant molecular biology · 2024Article
- Full-length transcriptome profiling ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2024Article
- Whole-genome sequencing in medicinal plants: current progress and prospect.Science China. Life sciences · 2024Review
- What we know so far and what we can expect next: A molecular investigation of plant parasitism.Genetics and molecular biology · 2024Article
- The sixth Japanese meeting on biological function and evolution through interactions between hosts and transposable elements.Mobile DNA · 2023Article
- How far can omics go in unveiling the mechanisms of floral senescence?Biochemical Society transactions · 2023Article
19 more citing papers are in PubMed but not listed here.
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Authors and funding
34 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Ipomoea is the largest genus in the family Convolvulaceae. Ipomoea nil (Japanese morning glory) has been utilized as a model plant to study the genetic basis of floricultural traits, with over 1,500 mutant lines. In the present study, we have utilized second- and third-generation-sequencing platforms, and have reported a draft genome of I. nil with a scaffold N50 of 2.88 Mb (contig N50 of 1.87 Mb), covering 98% of the 750 Mb genome. Scaffolds covering 91.42% of the assembly are anchored to 15 pseudo-chromosomes. The draft genome has enabled the identification and cataloguing of the Tpn1 family transposons, known as the major mutagen of I. nil, and analysing the dwarf gene, CONTRACTED, located on the genetic map published in 1956. Comparative genomics has suggested that a whole genome duplication in Convolvulaceae, distinct from the recent Solanaceae event, has occurred after the divergence of the two sister families.
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