ArticlemSystems
MetaPalette: a
Article in mSystems. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
36 citing papers in PubMed.
- 16S rRNA sequence captures microbial functional potential.bioRxiv : the preprint server for biology · 2026Article
- Deconvolving Phylogenetic Distance Mixtures.bioRxiv : the preprint server for biology · 2026Article
- SmallBARNA 2026: a kingdom-wide bacterial sRNA resource.Nucleic acids research · 2026Article
- Elucidating Transitions ofJournal of computational biology : a journal of computational molecular cell biology · 2026Article
- Antimicrobial resistance ofApplied and environmental microbiology · 2025Article
- Constructing inflammatory bowel disease diagnostic models based on k-mer and machine learning.Frontiers in microbiology · 2025Article
- A survey of k-mer methods and applications in bioinformatics.Computational and structural biotechnology journal · 2024Review
- Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes.Nature communications · 2024Article
- YACHT: an ANI-based statistical test to detect microbial presence/absence in a metagenomic sample.Bioinformatics (Oxford, England) · 2024Article
- MetaBIDx: a new computational approach to bacteria identification in microbiomes.Microbiome research reports · 2024Article
- Article
- TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles.GigaScience · 2022Article
- Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.BMC bioinformatics · 2022Article
- Strain level microbial detection and quantification with applications to single cell metagenomics.Nature communications · 2022Article
- CMash: fast, multi-resolution estimation of k-mer-based Jaccard and containment indices.Bioinformatics (Oxford, England) · 2022Article
- Critical Assessment of Metagenome Interpretation: the second round of challenges.Nature methods · 2022Article
- Short- and long-read metagenomics of urban and rural South African gut microbiomes reveal a transitional composition and undescribed taxa.Nature communications · 2022Article
- Context-aware genomic surveillance reveals hidden transmission of a carbapenemase-producingMicrobial genomics · 2021Article
- A zero inflated log-normal model for inference of sparse microbial association networks.PLoS computational biology · 2021Article
- Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Metagenomic profiling is challenging in part because of the highly uneven sampling of the tree of life by genome sequencing projects and the limitations imposed by performing phylogenetic inference at fixed taxonomic ranks. We present the algorithm MetaPalette, which uses long
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.