ArticlemSystems
Proteomic Stable Isotope Probing Reveals Taxonomically Distinct Patterns in Amino Acid Assimilation by Coastal Marine Bacterioplankton.
Article in mSystems. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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The trial behind it
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Who cites it
20 citing papers in PubMed, 39 citations in OpenAlex.
- Aerith: Visualization and Annotation of Isotopic Enrichment Patterns of Peptides and Metabolites with Stable Isotope Labeling from Proteomics and Metabolomics.Analytical chemistry · 2025Article
- Enhancing peptide identification in metaproteomics through curriculum learning in deep learning.Nature communications · 2025Article
- Metaproteomics reveals functional partitioning and vegetational variation among permafrost-affected Arctic soil bacterial communities.mSystems · 2023Article
- FineFDR: Fine-grained Taxonomy-specific False Discovery Rates Control in Metaproteomics.Proceedings. IEEE International Conference on Bioinformatics and Biomedicine · 2022Article
- MetaLP: An integrative linear programming method for protein inference in metaproteomics.PLoS computational biology · 2022Article
- Article
- Phytoplankton exudates and lysates support distinct microbial consortia with specialized metabolic and ecophysiological traits.Proceedings of the National Academy of Sciences of the United States of America · 2021Article
- Deep learning for peptide identification from metaproteomics datasets.Journal of proteomics · 2021Article
- Omics-Driven Biotechnology for Industrial Applications.Frontiers in bioengineering and biotechnology · 2021Review
- PepMANDIS: A Peptide Selection Tool for Designing Function-Based Targeted Proteomic Assays in Complex Microbial Systems.Frontiers in chemistry · 2021Article
- Growth phase proteomics of the heterotrophic marine bacterium Ruegeria pomeroyi.Scientific data · 2019Article
- Article
- Genome-Resolved Proteomic Stable Isotope Probing of Soil Microbial Communities UsingFrontiers in microbiology · 2019Article
- Deciphering the Functioning of Microbial Communities: Shedding Light on the Critical Steps in Metaproteomics.Frontiers in microbiology · 2019Article
- Sipros Ensemble improves database searching and filtering for complex metaproteomics.Bioinformatics (Oxford, England) · 2018Article
- 100 Days of marine Synechococcus-Ruegeria pomeroyi interaction: A detailed analysis of the exoproteome.Environmental microbiology · 2018Article
- Microbial Community Structure-Function Relationships in Yaquina Bay Estuary Reveal Spatially Distinct Carbon and Nitrogen Cycling Capacities.Frontiers in microbiology · 2018Article
- Phylogenetically conserved resource partitioning in the coastal microbial loop.The ISME journal · 2017Article
- Cumulative effects of suspended sediments, organic nutrients and temperature stress on early life history stages of the coral Acropora tenuis.Scientific reports · 2017Article
- Article
Corrections and comments
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Authors and funding
7 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Heterotrophic marine bacterioplankton are a critical component of the carbon cycle, processing nearly a quarter of annual primary production, yet defining how substrate utilization preferences and resource partitioning structure microbial communities remains a challenge. In this study, proteomic stable isotope probing (proteomic SIP) was used to characterize population-specific assimilation of dissolved free amino acids (DFAAs), a major source of dissolved organic carbon for bacterial secondary production in aquatic environments. Microcosms of seawater collected from Newport, Oregon, and Monterey Bay, California, were incubated with 1 µM
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.