Evidence map›Paper›PMID 27822318›Full record

ArticleClinical epigenetics2016

Discovery and replication of a peripheral tissue DNA methylation biosignature to augment a suicide prediction model.

Makena L Clive, Marco P Boks, Christiaan H Vinkers, Lauren M Osborne, Jennifer L Payne, Kerry J Ressler, Alicia K Smith, Holly C Wilcox, Zachary Kaminsky

Open access · goldAbstract read
In one paragraph

Article in Clinical epigenetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 61 citations in OpenAlex.

  1. Genetics and epigenetics of self-injurious thoughts and behaviors: Systematic review of the suicide literature and methodological considerations.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2022
    Pooled it
  2. Article
  3. Review
  4. SKA2 enhances stress-related glucocorticoid receptor signaling through FKBP4-FKBP5 interactions in neurons.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Article
  6. Review
  7. Epigenome-wide Association Study for Tic Disorders in Children: A Preliminary Study in Korean Population.Clinical psychopharmacology and neuroscience : the official scientific journal of the Korean College of Neuropsychopharmacology · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Advances in Research on Adolescent Suicide and a High Priority Agenda for Future Research.Journal of research on adolescence : the official journal of the Society for Research on Adolescence · 2021
    Review
  14. Article
  15. The Role of Epigenetic Dysregulation in Suicidal Behaviors.Current topics in behavioral neurosciences · 2020
    Article
  16. Article
  17. Article
  18. Neuroepigenetics of Post-Traumatic Stress Disorder.Progress in molecular biology and translational science · 2018
    Review
  19. Review
  20. Understanding Suicide Risk within the Research Domain Criteria (RDoC) Framework: Insights, Challenges, and Future Research Considerations.Clinical psychological science : a journal of the Association for Psychological Science · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Makena L CliveDepartment of Psychiatry and Behavioral Sciences, Johns Hopkins University School of Medicine, Baltimore, MD 21205 USA.
Marco P BoksDepartment of Psychiatry, Brain Center Rudolf Magnus, University Medical Center Utrecht (UMCU), Utrecht, The Netherlands.
Christiaan H VinkersDepartment of Psychiatry, Brain Center Rudolf Magnus, University Medical Center Utrecht (UMCU), Utrecht, The Netherlands.
Lauren M OsborneDepartment of Psychiatry and Behavioral Sciences, Johns Hopkins University School of Medicine, Baltimore, MD 21205 USA.
Jennifer L PayneDepartment of Psychiatry and Behavioral Sciences, Johns Hopkins University School of Medicine, Baltimore, MD 21205 USA.
Kerry J ResslerDepartment of Psychiatry, McLean Hospital, Harvard Medical School, Boston, MA 02478 USA ; Department of Psychiatry and Behavioral Sciences, Emory University School of Medicine, Atlanta, GA 30322 USA ; Howard Hughes Medical Institute, Chevy Chase, MD USA.
Alicia K SmithDepartment of Psychiatry and Behavioral Sciences, Emory University School of Medicine, Atlanta, GA 30322 USA.
Holly C WilcoxDepartment of Psychiatry and Behavioral Sciences, Johns Hopkins University School of Medicine, Baltimore, MD 21205 USA ; Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21218 USA.
Zachary KaminskyDepartment of Psychiatry and Behavioral Sciences, Johns Hopkins University School of Medicine, Baltimore, MD 21205 USA ; Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21218 USA ; The Mood Disorder Center, Johns Hopkins University, 720 Rutland Avenue, Ross Research Building 1070, Baltimore, MD 21205 USA.
Johns Hopkins University · USJohns Hopkins Medicine · USUniversity Medical Center Utrecht · NLEmory University · USMcLean Hospital · US

Funding

Traning Program in Environmental Health SciencesT32ES007141 · NIEHS · JOHNS HOPKINS UNIVERSITY · PI Marsha Wills-Karp · 1985 to 2026
$22.2M
TRANSITIONS INTO ADULTHOOD--THE BALTIMORE STUDYR01DA009897 · NIDA · JOHNS HOPKINS UNIVERSITY · PI EATON, WILLIAM W · 1997 to 2011
$4.4M
Genetics of Postpartum Depression in Affective DisordersK23MH074799 · NIMH · JOHNS HOPKINS UNIVERSITY · PI PAYNE, JENNIFER L · 2007 to 2011
$913k
Cell Epigenotype Specific Maps in the BrainR21MH094771 · NIMH · JOHNS HOPKINS UNIVERSITY · PI KAMINSKY, ZACHARY AARON · 2011 to 2012
$451k
NIDA NIH HHS R01 DA009897NIEHS NIH HHS T32 ES007141NIMH NIH HHS K23 MH074799NIMH NIH HHS R21 MH094771
6 · The paper itself

Abstract

backgroundSuicide is the second leading cause of death among adolescents in the USA, and rates are rising. Methods to identify individuals at risk are essential for implementing prevention strategies, and the development of a biomarker can potentially improve prediction of suicidal behaviors. Prediction of our previously reported

resultsUsing a custom bioinformatic brain to blood discovery algorithm, we derived a DNA methylation biosignature that interacts with

conclusionsWe conclude that this biosignature interacts with

Indexed as

DNA MethylationAdolescentChromosomal Proteins, Non-HistoneComputational BiologyDiscoidin Domain Receptor 1FemaleGenetic MarkersGenome-Wide Association StudyHealth SurveysHumansMaleModels, PsychologicalOligonucleotide Array Sequence AnalysisProtein Tyrosine Phosphatase, Non-Receptor Type 6Rho Guanine Nucleotide Exchange FactorsRisk AssessmentARHGEF10 protein, humanChromosomal Proteins, Non-HistoneDDR1 protein, humanDiscoidin Domain Receptor 1Genetic MarkersProtein Tyrosine Phosphatase, Non-Receptor Type 6Rho Guanine Nucleotide Exchange FactorsSKA2 protein, humanBiomarkerChildhood traumaDNA methylationEpigeneticsHPA axisIllumina HM450 microarraySKA2Suicide

Identifiers

PMID27822318
PMCPMC5093988
OpenAlexW2546898428

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.