ArticleScientific reports2016
Chromosome-specific sequencing reveals an extensive dispensable genome component in wheat.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Who cites it
11 citing papers in PubMed.
- Does one subgenome become dominant in the formation and evolution of a polyploid?Annals of botany · 2023Article
- Genes Associated with Foliar Resistance to Septoria Nodorum Blotch of Hexaploid Wheat (International journal of molecular sciences · 2021Article
- Identifying barley pan-genome sequence anchors using genetic mapping and machine learning.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Super-Pangenome by Integrating the Wild Side of a Species for Accelerated Crop Improvement.Trends in plant science · 2020Review
- Segregation distortion: Utilizing simulated genotyping data to evaluate statistical methods.PloS one · 2020Article
- Where the Wild Things Are: Transposable Elements as Drivers of Structural and Functional Variations in the Wheat Genome.Frontiers in plant science · 2020Review
- RNAseq analysis reveals drought-responsive molecular pathways with candidate genes and putative molecular markers in root tissue of wheat.Scientific reports · 2019Article
- Connecting genome structural variation with complex traits in crop plants.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Review
- A pan-transcriptome analysis shows that disease resistance genes have undergone more selection pressure during barley domestication.BMC genomics · 2019Article
- Chromosome-scale comparative sequence analysis unravels molecular mechanisms of genome dynamics between two wheat cultivars.Genome biology · 2018Article
- Sequence divergence between spelt and common wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The hexaploid wheat genotype Chinese Spring (CS) has been used worldwide as the reference base for wheat genetics and genomics, and significant resources have been used by the international community to generate a reference wheat genome based on this genotype. By sequencing flow-sorted 3B chromosome from a hexaploid wheat genotype CRNIL1A and comparing the obtained sequences with those available for CS, we detected that a large number of sequences in the former were missing in the latter. If the distribution of such sequences in the hexaploid wheat genome is random, CRNILA sequences missing in CS could be as much as 159.3 Mb even if only fragments of 50 bp or longer were considered. Analysing RNA sequences available in the public domains also revealed that dispensable genes are common in hexaploid wheat. Together with those extensive intra- and interchromosomal rearrangements in CS, the existence of such dispensable genes is another factor highlighting potential issues with the use of reference genomes in various studies. Strong deviation in distributions of these dispensable sequences among genotypes with different geographical origins provided the first evidence indicating that they could be associated with adaptation in wheat.
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