Evidence map›Paper›PMID 27821768›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Engineering dynamical control of cell fate switching using synthetic phospho-regulons.

Russell M Gordley, Reid E Williams, Caleb J Bashor, Jared E Toettcher, Shude Yan, Wendell A Lim

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. Ratiometric transcriptional activation by protein degradation.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Protein engineering: status report.Protein engineering, design & selection : PEDS · 2026
    Review
  5. Constructing an NF-κB Oscillator for Dual-Input Control in Yeast.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  6. Review
  7. Article
  8. Human Synthetic Biology and Programmable Gene Regulation Control.Annual review of genomics and human genetics · 2025
    Review
  9. Review
  10. Review
  11. Engineering synthetic phosphorylation signaling networks in human cells.bioRxiv : the preprint server for biology · 2023
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Can thiol-based redox systems be utilized as parts for synthetic biology applications?Redox report : communications in free radical research · 2021
    Article
  18. Review
  19. Article
  20. Engineering spatiotemporal organization and dynamics in synthetic cells.Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Russell M GordleyHoward Hughes Medical Institute, San Francisco, CA 94158.
Reid E WilliamsDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158.
Caleb J BashorDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158.
Jared E ToettcherHoward Hughes Medical Institute, San Francisco, CA 94158.
Shude YanDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158.
Wendell A LimHoward Hughes Medical Institute, San Francisco, CA 94158; wendell.lim@ucsf.edu.

Funding

Rewiring Therapeutic Cells: User-Controlled T Cells and Stem CellsP50GM081879 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIM, WENDELL A · 2010 to 2017
$19.0M
Cellular Control:Synthetic Signaling/Motility (RMI)PN2EY016546 · NEI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIM, WENDELL A · 2005 to 2014
$16.0M
PROTEIN RECOGNITION IN SIGNAL TRANSDUCTIONR01GM055040 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIM, WENDELL A · 1997 to 2015
$3.5M
PROTEIN INTERACTIONS REGULATING CELL MOTILITYR01GM062583 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIM, WENDELL A · 2001 to 2009
$2.2M
Combinatorial Exploration of Cellular Regulatory Network Design PrinciplesF32GM096499 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GORDLEY, RUSSELL · 2011 to 2012
$101k
Engineering Synthetic Cell Motility Systems (RMI)PN1EY016546 · NEI · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI LIM, WENDELL A · 2004 to 2004
$76k
Howard Hughes Medical InstituteNEI NIH HHS PN1 EY016546NEI NIH HHS PN2 EY016546NIGMS NIH HHS F32 GM096499NIGMS NIH HHS P50 GM081879NIGMS NIH HHS R01 GM055040NIGMS NIH HHS R01 GM062583
6 · The paper itself

Abstract

Many cells can sense and respond to time-varying stimuli, selectively triggering changes in cell fate only in response to inputs of a particular duration or frequency. A common motif in dynamically controlled cells is a dual-timescale regulatory network: although long-term fate decisions are ultimately controlled by a slow-timescale switch (e.g., gene expression), input signals are first processed by a fast-timescale signaling layer, which is hypothesized to filter what dynamic information is efficiently relayed downstream. Directly testing the design principles of how dual-timescale circuits control dynamic sensing, however, has been challenging, because most synthetic biology methods have focused solely on rewiring transcriptional circuits, which operate at a single slow timescale. Here, we report the development of a modular approach for flexibly engineering phosphorylation circuits using designed phospho-regulon motifs. By then linking rapid phospho-feedback with slower downstream transcription-based bistable switches, we can construct synthetic dual-timescale circuits in yeast in which the triggering dynamics and the end-state properties of the ON state can be selectively tuned. These phospho-regulon tools thus open up the possibility to engineer cells with customized dynamical control.

Indexed as

Cell EngineeringCell LineageSynthetic BiologyGene Regulatory NetworksMitogen-Activated Protein KinasesPhosphorylationRegulonSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTime FactorsTranscription, GeneticFUS3 protein, S cerevisiaeMitogen-Activated Protein KinasesSaccharomyces cerevisiae Proteinsdynamical controlphosphorylationsynthetic biology

Identifiers

PMID27821768
PMCPMC5127309

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.