Evidence map›Paper›PMID 27821747›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Systematic autoantigen analysis identifies a distinct subtype of scleroderma with coincident cancer.

George J Xu, Ami A Shah, Mamie Z Li, Qikai Xu, Antony Rosen, Livia Casciola-Rosen, Stephen J Elledge

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 106 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Proviruses in CD4Science translational medicine · 2025
    Article
  5. A Genome-Wide Screening of Novel Immunogenic TrLSDV103 Protein of Lumpy Skin Disease Virus and Its Application for DIVA.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Article
  6. Review
  7. Article
  8. Article
  9. IP-to-MS: An Unbiased Workflow for Antigen Profiling.Journal of proteome research · 2025
    Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. PhIP-Seq: methods, applications and challenges.Frontiers in bioinformatics · 2024
    Review
  19. Article
  20. Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

George J XuProgram in Biophysics, Harvard University, Cambridge, MA 02115.
Ami A ShahDivision of Rheumatology, Johns Hopkins University School of Medicine, Baltimore, MD 21224.
Mamie Z LiDivision of Genetics, Department of Medicine, Brigham and Women's Hospital, Boston, MA 02115.
Qikai XuDivision of Genetics, Department of Medicine, Brigham and Women's Hospital, Boston, MA 02115.
Antony RosenDivision of Rheumatology, Johns Hopkins University School of Medicine, Baltimore, MD 21224.
Livia Casciola-RosenDivision of Rheumatology, Johns Hopkins University School of Medicine, Baltimore, MD 21224 selledge@genetics.med.harvard.edu lcr@jhmi.edu.
Stephen J ElledgeDivision of Genetics, Department of Medicine, Brigham and Women's Hospital, Boston, MA 02115; selledge@genetics.med.harvard.edu lcr@jhmi.edu.
Brigham and Women's Hospital · USJohns Hopkins University · USHarvard University · USHoward Hughes Medical Institute · USJohns Hopkins Medicine · US

Funding

Phenotype-Specific Immune Responses in the Systemic VasculitidesP30AR053503 · NIAMS · JOHNS HOPKINS UNIVERSITY · PI SOLOSKI, MARK J · 2006 to 2015
$6.4M
Apoptosis in Sjogrens SyndromeR37DE012354 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI ROSEN, ANTONY · 2002 to 2011
$5.3M
Mechanisms in Sjogrens SyndromeR01DE012354 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI ROSEN, ANTONY · 1998 to 2017
$3.4M
Cancer, Autoantigens, and Scleroderma Investigating the ConnectionK23AR061439 · NIAMS · JOHNS HOPKINS UNIVERSITY · PI SHAH, AMI AALOK · 2012 to 2016
$699k
NIAMS NIH HHS K23 AR061439NIAMS NIH HHS P30 AR053503NIDCR NIH HHS R01 DE012354NIDCR NIH HHS R37 DE012354
6 · The paper itself

Abstract

Scleroderma is a chronic autoimmune rheumatic disease associated with widespread tissue fibrosis and vasculopathy. Approximately two-thirds of all patients with scleroderma present with three dominant autoantibody subsets. Here, we used a pair of complementary high-throughput methods for antibody epitope discovery to examine patients with scleroderma with or without known autoantibody specificities. We identified a specificity for the minor spliceosome complex containing RNA Binding Region (RNP1, RNA recognition motif) Containing 3 (RNPC3) that is found in patients with scleroderma without known specificities and is absent in unrelated autoimmune diseases. We found strong evidence for both intra- and intermolecular epitope spreading in patients with RNA polymerase III (POLR3) and the minor spliceosome specificities. Our results demonstrate the utility of these technologies in rapidly identifying antibodies that can serve as biomarkers of disease subsets in the evolving precision medicine era.

Indexed as

Apoptosis Regulatory ProteinsAutoantibodiesAutoantigensCell Surface Display TechniquesComorbidityEpitopesHumansNuclear ProteinsOpen Reading FramesRibonucleoproteins, Small NuclearRNA-Binding ProteinsRNA Polymerase IIIScleroderma, SystemicSequence Analysis, DNASkin NeoplasmsTranscription FactorsApoptosis Regulatory ProteinsAutoantibodiesAutoantigensEpitopesNuclear ProteinsPDCD7 protein, humanRibonucleoproteins, Small NuclearRNA-Binding ProteinsRNA Polymerase IIIRNPC3 protein, humanSNRNP25 protein, humanSNRNP35 protein, humanTranscription FactorsautoimmunityPhIP-SeqPLATOsystemic sclerosis

Identifiers

PMID27821747
PMCPMC5127349
OpenAlexW2550055437

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.