Evidence map›Paper›PMID 27821593›Full record

ArticleThe Journal of biological chemistry2016

Role for the MED21-MED7 Hinge in Assembly of the Mediator-RNA Polymerase II Holoenzyme.

Shigeo Sato, Chieri Tomomori-Sato, Kuang-Lei Tsai, Xiaodi Yu, Mihaela Sardiu, Anita Saraf, Michael P Washburn, Laurence Florens, Francisco J Asturias, Ronald C Conaway and 1 more

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Repression by theeLife · 2021
    Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Twenty years of Mediator complex structural studies.Biochemical Society transactions · 2019
    Review
  18. The complex structure and function of Mediator.The Journal of biological chemistry · 2018
    Review
  19. Transcription regulation by the Mediator complex.Nature reviews. Molecular cell biology · 2018
    Review
  20. Frontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Shigeo SatoFrom the Stowers Institute for Medical Research, Kansas City, Missouri 64110.
Chieri Tomomori-SatoFrom the Stowers Institute for Medical Research, Kansas City, Missouri 64110.
Kuang-Lei Tsaithe Department of Integrative Structural and Computational Biology, Scripps Research Institute, La Jolla, California 92037, and.
Xiaodi Yuthe Department of Integrative Structural and Computational Biology, Scripps Research Institute, La Jolla, California 92037, and.
Mihaela SardiuFrom the Stowers Institute for Medical Research, Kansas City, Missouri 64110.
Anita SarafFrom the Stowers Institute for Medical Research, Kansas City, Missouri 64110.
Michael P WashburnFrom the Stowers Institute for Medical Research, Kansas City, Missouri 64110.
Laurence FlorensFrom the Stowers Institute for Medical Research, Kansas City, Missouri 64110.
Francisco J Asturiasthe Department of Integrative Structural and Computational Biology, Scripps Research Institute, La Jolla, California 92037, and.
Ronald C ConawayFrom the Stowers Institute for Medical Research, Kansas City, Missouri 64110.
Joan W ConawayFrom the Stowers Institute for Medical Research, Kansas City, Missouri 64110, jlc@stowers.org.ORCID http://orcid.org/0000-0002-2786-0663

Funding

STRUCTURAL STUDIES OF EUKARYOTIC TRANSCRIPTIONR01GM067167 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI ASTURIAS, FRANCISCO J · 2003 to 2025
$9.2M
BIOCHEMISTRY OF EUKARYOTIC MESSENGER RNA SYNTHESISR37GM041628 · NIGMS · STOWERS INSTITUTE FOR MEDICAL RESEARCH · PI CONAWAY, RONALD C. · 2000 to 2009
$3.8M
BIOCHEMISTRY OF EUKARYOTIC MESSENGER SYNTHESISR01GM041628 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI CONAWAY, JOAN W, CONAWAY, RONALD C. · 1989 to 2013
$1.5M
NIGMS NIH HHS R01 GM041628NIGMS NIH HHS R01 GM067167NIGMS NIH HHS R37 GM041628
6 · The paper itself

Abstract

Mediator plays an integral role in activation of RNA polymerase II (Pol II) transcription. A key step in activation is binding of Mediator to Pol II to form the Mediator-Pol II holoenzyme. Here, we exploit a combination of biochemistry and macromolecular EM to investigate holoenzyme assembly. We identify a subset of human Mediator head module subunits that bind Pol II independent of other subunits and thus probably contribute to a major Pol II binding site. In addition, we show that binding of human Mediator to Pol II depends on the integrity of a conserved "hinge" in the middle module MED21-MED7 heterodimer. Point mutations in the hinge region leave core Mediator intact but lead to increased disorder of the middle module and markedly reduced affinity for Pol II. These findings highlight the importance of Mediator conformation for holoenzyme assembly.

Indexed as

Amino Acid SequenceBinding SitesCrystallography, X-RayHoloenzymesHumansMediator ComplexProtein BindingProtein ConformationRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence Homology, Amino AcidTranscription, GeneticHoloenzymesMED21 protein, humanMED7 protein, humanMediator ComplexRNA Polymerase IISaccharomyces cerevisiae Proteinsgeneral transcription factor (GTF)MediatorRNA polymerase IItranscriptiontranscription coregulatortranscription regulation

Identifiers

PMID27821593
PMCPMC5207194

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.