Evidence map›Paper›PMID 27821429›Full record

ArticleEMBO molecular medicine2016

Non-invasive lung cancer diagnosis by detection of GATA6 and NKX2-1 isoforms in exhaled breath condensate.

Aditi Mehta, Julio Cordero, Stephanie Dobersch, Addi J Romero-Olmedo, Rajkumar Savai, Johannes Bodner, Cho-Ming Chao, Ludger Fink, Ernesto Guzmán-Díaz, Indrabahadur Singh and 12 more

Open access · goldAbstract readValidation Study
In one paragraph

Article in EMBO molecular medicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
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  6. Article
  7. Review
  8. The expression of the GATA6 gene in oral carcinoma cell lines.World journal of surgical oncology · 2021
    Article
  9. Article
  10. Molecular biomarkers in early stage lung cancer.Translational lung cancer research · 2021
    Review
  11. Article
  12. Article
  13. Early diagnosis and screening in lung cancer.American journal of cancer research · 2020
    Review
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 4 institutions in 3 countries.

Aditi MehtaLOEWE Research Group Lung Cancer Epigenetic, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.
Julio CorderoLOEWE Research Group Lung Cancer Epigenetic, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.
Stephanie DoberschLOEWE Research Group Lung Cancer Epigenetic, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.
Addi J Romero-OlmedoLOEWE Research Group Lung Cancer Epigenetic, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.
Rajkumar SavaiDepartment of Lung Development and Remodeling, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.
Johannes BodnerSection Thoracic Surgery, Justus Liebig University, Giessen, Germany.
Cho-Ming ChaoChair for Lung Matrix Remodeling, Excellence Cluster Cardio Pulmonary System, Justus Liebig University, Giessen, Germany.
Ludger FinkInstitute of Pathology and Cytology, UEGP, Wetzlar, Germany.
Ernesto Guzmán-DíazRegional Hospital of High Specialties of Oaxaca (HRAEO), Oaxaca, Mexico.
Indrabahadur SinghLOEWE Research Group Lung Cancer Epigenetic, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.
Gergana DobrevaEmmy Noether Research Group Origin of Cardiac Cell Lineages, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.
Ulf R RappDepartment of Lung Development and Remodeling, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.
Stefan GüntherDepartment of Cardiac Development and Remodeling, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.
Olga N IlinskayaInstitute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, Kazan, Russian Federation.
Saverio BellusciChair for Lung Matrix Remodeling, Excellence Cluster Cardio Pulmonary System, Justus Liebig University, Giessen, Germany.
Reinhard H DammannInstitute for Genetics, Justus Liebig University, Giessen, Germany.
Thomas BraunDepartment of Cardiac Development and Remodeling, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.
Werner SeegerDepartment of Lung Development and Remodeling, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany.
Stefan GattenlöhnerInstitute for Pathology, Justus Liebig University, Giessen, Germany.
Achim TreschMax Planck Institute for Plant Breeding Research, Cologne, Germany.
Andreas GüntherPulmonary and Critical Care Medicine, Department of Internal Medicine, Justus Liebig University, Giessen, Germany.
Guillermo BarretoLOEWE Research Group Lung Cancer Epigenetic, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany guillermo.barreto@mpi-bn.mpg.de.ORCID 0000-0002-7777-4712
Max Planck Institute for Heart and Lung Research · DEJustus-Liebig-Universität Gießen · DEKazan Federal University · RUUniversity of Cologne · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lung cancer (LC) is the leading cause of cancer-related deaths worldwide. Early LC diagnosis is crucial to reduce the high case fatality rate of this disease. In this case-control study, we developed an accurate LC diagnosis test using retrospectively collected formalin-fixed paraffin-embedded (FFPE) human lung tissues and prospectively collected exhaled breath condensates (EBCs). Following international guidelines for diagnostic methods with clinical application, reproducible standard operating procedures (SOP) were established for every step comprising our LC diagnosis method. We analyzed the expression of distinct mRNAs expressed from GATA6 and NKX2-1, key regulators of lung development. The Em/Ad expression ratios of GATA6 and NKX2-1 detected in EBCs were combined using linear kernel support vector machines (SVM) into the LC score, which can be used for LC detection. LC score-based diagnosis achieved a high performance in an independent validation cohort. We propose our method as a non-invasive, accurate, and low-price option to complement the success of computed tomography imaging (CT) and chest X-ray (CXR) for LC diagnosis.

Indexed as

Breath TestsCase-Control StudiesDecision Support TechniquesGATA6 Transcription FactorHumansLung NeoplasmsNuclear ProteinsProspective StudiesProtein IsoformsRetrospective StudiesThyroid Nuclear Factor 1Transcription FactorsGATA6 protein, humanGATA6 Transcription FactorNuclear ProteinsProtein IsoformsThyroid Nuclear Factor 1Transcription FactorsEBCGATA6lung cancermolecular diagnosticsNKX2‐1

Identifiers

PMID27821429
PMCPMC5167131
OpenAlexW2553474572

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.