Evidence map›Paper›PMID 27821283›Full record

ArticleVirology2017

Dynamic conformational changes in the rhesus TRIM5α dimer dictate the potency of HIV-1 restriction.

Rajan Lamichhane, Santanu Mukherjee, Nikolai Smolin, Raymond F Pauszek, Margret Bradley, Jaya Sastri, Seth L Robia, David Millar, Edward M Campbell

Open access · greenAbstract read
In one paragraph

Article in Virology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Restriction of HIV-1 and other retroviruses by TRIM5.Nature reviews. Microbiology · 2019
    Review
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Rajan LamichhaneDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.
Santanu MukherjeeDepartment of Microbiology and Immunology, Stritch School of Medicine, Loyola University Chicago, Chicago, IL, USA.
Nikolai SmolinDepartment of Cell and Molecular Physiology, Stritch School of Medicine, Loyola University Chicago, Chicago, IL, USA.
Raymond F PauszekDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.
Margret BradleyDepartment of Microbiology and Immunology, Stritch School of Medicine, Loyola University Chicago, Chicago, IL, USA.
Jaya SastriViral Mutation Section, HIV Dynamics and Replication Program, National Cancer Institute at Frederick, Frederick, MD, USA.
Seth L RobiaDepartment of Cell and Molecular Physiology, Stritch School of Medicine, Loyola University Chicago, Chicago, IL, USA.
David MillarDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, USA.
Edward M CampbellDepartment of Microbiology and Immunology, Stritch School of Medicine, Loyola University Chicago, Chicago, IL, USA.
Loyola University Chicago · USScripps Research Institute · USFrederick National Laboratory for Cancer Research · US

Funding

X-ray Cryst. CoreP50GM082545 · NIGMS · UNIVERSITY OF UTAH · PI SUNDQUIST, WESLEY I. · 2007 to 2018
$51.1M
Structural Determinants of Calcium Pump RegulationR01HL092321 · NHLBI · LOYOLA UNIVERSITY CHICAGO · PI Seth L Robia · 2008 to 2026
$8.9M
Loyola Research Computing CoreG20RR030939 · NCRR · LOYOLA UNIVERSITY CHICAGO · PI KENNEDY, RICHARD H. · 2010 to 2010
$2.7M
The Cell Biology of TRIM5alphaR01AI093258 · NIAID · LOYOLA UNIVERSITY CHICAGO · PI CAMPBELL, EDWARD M · 2011 to 2015
$1.8M
Molecular and cellular determinants of TRIM5alpha restriction of HIV-1R01AI150456 · NIAID · LOYOLA UNIVERSITY CHICAGO · PI CAMPBELL, EDWARD M · 2019 to 2019
$371k
NCRR NIH HHS G20 RR030939NHLBI NIH HHS R01 HL092321NIAID NIH HHS R01 AI093258NIAID NIH HHS R01 AI150456NIGMS NIH HHS P50 GM082545
6 · The paper itself

Abstract

The TRIM5α protein from rhesus macaques (rhTRIM5α) mediates a potent inhibition of HIV-1 infection via a mechanism that involves the abortive disassembly of the viral core. We have demonstrated that alpha-helical elements within the Linker 2 (L2) region, which lies between the SPRY domain and the Coiled-Coil domain, influence the potency of restriction. Here, we utilize single-molecule FRET analysis to reveal that the L2 region of the TRIM5α dimer undergoes dynamic conformational changes, which results in the displacement of L2 regions by 25 angstroms relative to each other. Analysis of restriction enhancing or abrogating mutations in the L2 region reveal that restriction defective mutants are unable to undergo dynamic conformational changes and do not assume compact, alpha-helical conformations in the L2 region. These data suggest a model in which conformational changes in the L2 region mediate displacement of CA bound SPRY domains to induce the destabilization of assembled capsid during restriction.

Indexed as

Amino Acid SequenceAnimalsCarrier ProteinsCell LineDimerizationDisease Models, AnimalHIV-1HIV InfectionsHumansMacaca mulattaMutationProtein ConformationCarrier ProteinsCoiled coilDimerHIV-1Molecular dynamics simulationRestriction factorSingle molecule FRETsmFRETTRIM5alphaTripartite Motif

Identifiers

PMID27821283
PMCPMC5327651
OpenAlexW2547278612

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.