Evidence map›Paper›PMID 27821061›Full record

ArticleBMC genomics2016

Variations on a theme: Genomics of sex determination in the cichlid fish Astatotilapia burtoni.

Astrid Böhne, Catherine A Wilson, John H Postlethwait, Walter Salzburger

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
6.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 40 citations in OpenAlex.

  1. Near-complete genomes for nine haplochromine cichlid fishes reveal a novel centromeric satellite structure organised around a pair of inverted elements.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2026
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  11. No evidence for genetic sex determination inRoyal Society open science · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Astrid BöhneZoological Institute, University of Basel, Vesalgasse 1, 4051, Basel, Switzerland. astrid.boehne@unibas.ch.
Catherine A WilsonInstitute of Neuroscience, University of Oregon, Eugene, OR, USA.
John H PostlethwaitInstitute of Neuroscience, University of Oregon, Eugene, OR, USA.
Walter SalzburgerZoological Institute, University of Basel, Vesalgasse 1, 4051, Basel, Switzerland.
University of Basel · CHUniversity of Oregon · US

Funding

Mechanisms of Sex Determination in ZebrafishR01GM085318 · NIGMS · UNIVERSITY OF OREGON · PI POSTLETHWAIT, JOHN H. · 2010 to 2018
$2.1M
NIGMS NIH HHS R01 GM085318
6 · The paper itself

Abstract

backgroundSex chromosomes change more frequently in fish than in mammals or birds. However, certain chromosomes or genes are repeatedly used as sex determinants in different members of the teleostean lineage. East African cichlids are an enigmatic model system in evolutionary biology representing some of the most diverse extant vertebrate adaptive radiations. How sex is determined and if different sex-determining mechanisms contribute to speciation is unknown for almost all of the over 1,500 cichlid species of the Great Lakes. Here, we investigated the genetic basis of sex determination in a cichlid from Lake Tanganyika, Astatotilapia burtoni, a member of the most species-rich cichlid lineage, the haplochromines.

resultsWe used RAD-sequencing of crosses for two populations of A. burtoni, a lab strain and fish caught at the south of Lake Tanganyika. Using association mapping and comparative genomics, we confirmed male heterogamety in A. burtoni and identified different sex chromosomes (LG5 and LG18) in the two populations of the same species. LG5, the sex chromosome of the lab strain, is a fusion chromosome in A. burtoni. Wnt4 is located on this chromosome, representing the best candidate identified so far for the master sex-determining gene in our lab strain of A. burtoni.

conclusionsCichlids exemplify the high turnover rate of sex chromosomes in fish with two different chromosomes, LG5 and LG18, containing major sex-determining loci in the two populations of A. burtoni examined here. However, they also illustrate that particular chromosomes are more likely to be used as sex chromosomes. Chromosome 5 is such a chromosome, which has evolved several times as a sex chromosome, both in haplochromine cichlids from all Great Lakes and also in other teleost fishes.

Indexed as

GenomicsAnimalsCichlidsComputational BiologyEvolution, MolecularFemaleGene ExpressionGene OntologyMalePhylogenyPolymorphism, GeneticQuantitative Trait LociSequence Analysis, DNASex ChromosomesSex Determination ProcessesCichlidRAD sequencingSex chromosomeSex determinationWnt4

Identifiers

PMID27821061
PMCPMC5100337
OpenAlexW2555519838

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.