Evidence map›Paper›PMID 27820844›Full record

ArticlePloS one2016

Transcriptome Analysis of the Midgut of the Chinese Oak Silkworm Antheraea pernyi Infected with Antheraea pernyi Nucleopolyhedrovirus.

Xi-Sheng Li, Guo-Bao Wang, Ying Sun, Wei Liu, Ying-Zi He, Feng-Cheng Wang, Yi-Ren Jiang, Li Qin

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Xi-Sheng LiCollege of Plant Protection, Shenyang Agricultural University, Shenyang, 110866, China.
Guo-Bao WangCollege of Bioscience and Biotechnology, Liaoning Engineering & Technology Research Center for Insect Resources, Shenyang Agricultural University, Shenyang, 110866, China.
Ying SunCollege of Plant Protection, Shenyang Agricultural University, Shenyang, 110866, China.
Wei LiuCollege of Bioscience and Biotechnology, Liaoning Engineering & Technology Research Center for Insect Resources, Shenyang Agricultural University, Shenyang, 110866, China.
Ying-Zi HeSericultural Research Institute of Liaoning Province, Fengcheng, 118100, China.
Feng-Cheng WangSericultural Research Institute of Liaoning Province, Fengcheng, 118100, China.
Yi-Ren JiangCollege of Bioscience and Biotechnology, Liaoning Engineering & Technology Research Center for Insect Resources, Shenyang Agricultural University, Shenyang, 110866, China.
Li QinCollege of Plant Protection, Shenyang Agricultural University, Shenyang, 110866, China.
Shenyang Agricultural University · CNSericultural Research Institute · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Antheraea pernyi nucleopolyhedrovirus (ApNPV) is an exclusive pathogen of A. pernyi. The intense interactions between ApNPV and A. pernyi cause a series of physiological and pathological changes to A. pernyi. However, no detailed report exists regarding the molecular mechanisms underlying the interactions between ApNPV and A. pernyi. In this study, four cDNA libraries of the A. pernyi midgut, including two ApNPV-infected groups and two control groups, were constructed for transcriptomic analysis to provide new clues regarding the molecular mechanisms that underlie these interactions. The transcriptome of the A. pernyi midgut was de novo assembled using the Trinity platform because of the lack of a genome resource for A. pernyi. Compared with the controls, a total of 5,172 differentially expressed genes (DEGs) were identified, including 2,183 up-regulated and 2,989 down-regulated candidates, of which 2,965 and 911 DEGs were classified into different GO categories and KEGG pathways, respectively. The DEGs involved in A. pernyi innate immunity were classified into several categories, including heat-shock proteins, apoptosis-related proteins, serpins, serine proteases and cytochrome P450s. Our results suggested that these genes were related to the immune response of the A. pernyi midgut to ApNPV infection via their essential roles in regulating a variety of physiological processes. Our results may serve as a basis for future research not only on the molecular mechanisms of ApNPV invasion but also on the anti-ApNPV mechanism of A. pernyi.

Indexed as

AnimalsApoptosis Regulatory ProteinsBombyxDown-RegulationGene ExpressionGene Expression ProfilingGene LibraryHeat-Shock ProteinsInsect ProteinsMothsNucleopolyhedrovirusesSequence Analysis, DNATranscriptomeUp-RegulationApoptosis Regulatory ProteinsHeat-Shock ProteinsInsect Proteins

Identifiers

PMID27820844
PMCPMC5098726
OpenAlexW2553870949

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.