Evidence map›Paper›PMID 27820827›Full record

ArticlePLoS computational biology2016

Effect of Ionic Diffusion on Extracellular Potentials in Neural Tissue.

Geir Halnes, Tuomo Mäki-Marttunen, Daniel Keller, Klas H Pettersen, Ole A Andreassen, Gaute T Einevoll

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 69 citations in OpenAlex.

  1. Field potential 1/Journal of neurophysiology · 2019
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  4. Sodium-Controlled Interfacial Resistive Switching in Thin Film Niobium Oxide for Neuromorphic Applications.Chemistry of materials : a publication of the American Chemical Society · 2024
    Article
  5. Human Sensorimotor Beta Event Characteristics and Aperiodic Signal Are Highly Heritable.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Article
  6. Cortical origin of theta error signals.Cerebral cortex (New York, N.Y. : 1991) · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Computing Extracellular Electric Potentials from Neuronal Simulations.Advances in experimental medicine and biology · 2022
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Electrodiffusion models of synaptic potentials in dendritic spines.Journal of computational neuroscience · 2019
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Geir HalnesDepartment of Mathematical Sciences and Technology, Norwegian University of Life Sciences, Ås, Norway.
Tuomo Mäki-MarttunenNORMENT, KG Jebsen Centre for Psychosis Research, Institute of Clinical Medicine, University of Oslo, Oslo, Norway.
Daniel KellerBlue Brain Project, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.
Klas H PettersenLetten Centre and GliaLab, Institute of Basic Medical Sciences, University of Oslo, Oslo, Norway.
Ole A AndreassenNORMENT, KG Jebsen Centre for Psychosis Research, Institute of Clinical Medicine, University of Oslo, Oslo, Norway.
Gaute T EinevollDepartment of Mathematical Sciences and Technology, Norwegian University of Life Sciences, Ås, Norway.ORCID http://orcid.org/0000-0002-5425-5012
University of Oslo · NOÉcole Polytechnique Fédérale de Lausanne · CHNorwegian University of Life Sciences · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recorded potentials in the extracellular space (ECS) of the brain is a standard measure of population activity in neural tissue. Computational models that simulate the relationship between the ECS potential and its underlying neurophysiological processes are commonly used in the interpretation of such measurements. Standard methods, such as volume-conductor theory and current-source density theory, assume that diffusion has a negligible effect on the ECS potential, at least in the range of frequencies picked up by most recording systems. This assumption remains to be verified. We here present a hybrid simulation framework that accounts for diffusive effects on the ECS potential. The framework uses (1) the NEURON simulator to compute the activity and ionic output currents from multicompartmental neuron models, and (2) the electrodiffusive Kirchhoff-Nernst-Planck framework to simulate the resulting dynamics of the potential and ion concentrations in the ECS, accounting for the effect of electrical migration as well as diffusion. Using this framework, we explore the effect that ECS diffusion has on the electrical potential surrounding a small population of 10 pyramidal neurons. The neural model was tuned so that simulations over ∼100 seconds of biological time led to shifts in ECS concentrations by a few millimolars, similar to what has been seen in experiments. By comparing simulations where ECS diffusion was absent with simulations where ECS diffusion was included, we made the following key findings: (i) ECS diffusion shifted the local potential by up to ∼0.2 mV. (ii) The power spectral density (PSD) of the diffusion-evoked potential shifts followed a 1/f2 power law. (iii) Diffusion effects dominated the PSD of the ECS potential for frequencies up to several hertz. In scenarios with large, but physiologically realistic ECS concentration gradients, diffusion was thus found to affect the ECS potential well within the frequency range picked up in experimental recordings.

Indexed as

Models, NeurologicalAnimalsComputer SimulationDiffusionElectromagnetic FieldsExtracellular FluidHumansIon Channel GatingIonsMembrane PotentialsModels, ChemicalNerve NetNeuronsIons

Identifiers

PMID27820827
PMCPMC5098741
OpenAlexW1759399345

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.