Evidence map›Paper›PMID 27820797›Full record

ArticleNature chemical biology2017

Non-classical transpeptidases yield insight into new antibacterials.

Pankaj Kumar, Amit Kaushik, Evan P Lloyd, Shao-Gang Li, Rohini Mattoo, Nicole C Ammerman, Drew T Bell, Alexander L Perryman, Trevor A Zandi, Sean Ekins and 4 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 140 citations in OpenAlex.

  1. Trial
  2. Outer Membrane-Peptidoglycan Anchoring inJournal of the American Chemical Society · 2026
    Article
  3. Article
  4. Review
  5. Peptidoglycan LD-Transpeptidases.Antibiotics (Basel, Switzerland) · 2025
    Review
  6. Article
  7. Article
  8. Recent Advances and Future Prospects in Biological-Membrane-Targeted Polymers.Polymer science & technology (Washington, D.C.) · 2025
    Review
  9. Article
  10. Novel C5α-substituted carbapenems enhanceAntimicrobial agents and chemotherapy · 2025
    Article
  11. Sanfetrinem, an oral β-lactam antibiotic repurposed for the treatment of tuberculosis.Drug resistance updates : reviews and commentaries in antimicrobial and anticancer chemotherapy · 2025
    Article
  12. Review
  13. Review
  14. Evolution toward extremely high imipenem resistance inAntimicrobial agents and chemotherapy · 2024
    Article
  15. Article
  16. Article
  17. Review
  18. Identification of a family of peptidoglycan transpeptidases reveals thatProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  19. Dual β-lactam for treatment of pulmonaryAntimicrobial agents and chemotherapy · 2024
    Article
  20. Case Commentary: Dual β-lactam as part of regimen to treatAntimicrobial agents and chemotherapy · 2024
    Article

26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Pankaj KumarDepartment of Medicine, Johns Hopkins University, Baltimore, Maryland, USA.
Amit KaushikDepartment of Medicine, Johns Hopkins University, Baltimore, Maryland, USA.
Evan P LloydDepartment of Chemistry, Johns Hopkins University, Baltimore, Maryland, USA.
Shao-Gang LiDepartments of Pharmacology &Physiology and Medicine, Rutgers University Medical School, New Jersey, USA.
Rohini MattooDepartment of Medicine, Johns Hopkins University, Baltimore, Maryland, USA.
Nicole C AmmermanDepartment of Medicine, Johns Hopkins University, Baltimore, Maryland, USA.
Drew T BellDepartment of Medicine, Johns Hopkins University, Baltimore, Maryland, USA.
Alexander L PerrymanDepartments of Pharmacology &Physiology and Medicine, Rutgers University Medical School, New Jersey, USA.
Trevor A ZandiDepartment of Biophysics, Johns Hopkins University, Baltimore, Maryland, USA.
Sean EkinsCollaborations in Chemistry, Fuquay-Varina, North Carolina, USA.ORCID http://orcid.org/0000-0002-5691-5790
Stephan L GinellBiosciences Division, Argonne National Laboratory, Argonne, Illinois, USA.
Craig A TownsendDepartment of Chemistry, Johns Hopkins University, Baltimore, Maryland, USA.
Joel S FreundlichDepartments of Pharmacology &Physiology and Medicine, Rutgers University Medical School, New Jersey, USA.
Gyanu LamichhaneDepartment of Medicine, Johns Hopkins University, Baltimore, Maryland, USA.ORCID http://orcid.org/0000-0002-2214-0114
Johns Hopkins University · USRutgers, The State University of New Jersey · USArgonne National Laboratory · USCollaborations Pharmaceuticals (United States) · US

Funding

New Drug for Treatment of Chronic Bacterial InfectionDP2OD008459 · OD · JOHNS HOPKINS UNIVERSITY · PI LAMICHHANE, GYANU · 2011 to 2013
$2.6M
Development of an Oral Carbapenem Drug for Treatment of Drug Resistant TBR33AI111739 · NIAID · JOHNS HOPKINS UNIVERSITY · PI LAMICHHANE, GYANU · 2016 to 2018
$1.4M
Development of an Oral Carbapenem Drug for Treatment of Drug Resistant TBR21AI111739 · NIAID · JOHNS HOPKINS UNIVERSITY · PI LAMICHHANE, GYANU · 2014 to 2015
$453k
NIAID NIH HHS R21 AI111739NIAID NIH HHS R33 AI111739NIH HHS DP2 OD008459
6 · The paper itself

Abstract

Bacterial survival requires an intact peptidoglycan layer, a three-dimensional exoskeleton that encapsulates the cytoplasmic membrane. Historically, the final steps of peptidoglycan synthesis are known to be carried out by D,D-transpeptidases, enzymes that are inhibited by the β-lactams, which constitute >50% of all antibacterials in clinical use. Here, we show that the carbapenem subclass of β-lactams are distinctly effective not only because they inhibit D,D-transpeptidases and are poor substrates for β-lactamases, but primarily because they also inhibit non-classical transpeptidases, namely the L,D-transpeptidases, which generate the majority of linkages in the peptidoglycan of mycobacteria. We have characterized the molecular mechanisms responsible for inhibition of L,D-transpeptidases of Mycobacterium tuberculosis and a range of bacteria including ESKAPE pathogens, and used this information to design, synthesize and test simplified carbapenems with potent antibacterial activity.

Indexed as

Anti-Bacterial Agentsbeta-LactamsDose-Response Relationship, DrugMicrobial Sensitivity TestsModels, MolecularMolecular ConformationMycobacterium tuberculosisPeptidyl TransferasesStructure-Activity RelationshipAnti-Bacterial Agentsbeta-LactamsPeptidyl Transferases

Identifiers

PMID27820797
PMCPMC5477059
OpenAlexW2548232666

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.