Evidence map›Paper›PMID 27819263›Full record

ArticleNature communications2016

REST regulation of gene networks in adult neural stem cells.

Shradha Mukherjee, Rebecca Brulet, Ling Zhang, Jenny Hsieh

Abstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. REST in the Road Map of Brain Development.Cellular and molecular neurobiology · 2023
    Review
  9. LncRNALife science alliance · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Recent advances in tissue stem cells.Science China. Life sciences · 2021
    Review
  15. Article
  16. Article
  17. The Genome-Wide Binding Profile for Human RE1 Silencing Transcription Factor Unveils a Unique Genetic Circuitry in Hippocampus.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
    Article
  18. Soft repression: Subtle transcriptional regulation with global impact.BioEssays : news and reviews in molecular, cellular and developmental biology · 2021
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Shradha MukherjeeDepartment of Molecular Biology and Hamon Center for Regenerative Science and Medicine, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA.
Rebecca BruletDepartment of Molecular Biology and Hamon Center for Regenerative Science and Medicine, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA.
Ling ZhangDepartment of Molecular Biology and Hamon Center for Regenerative Science and Medicine, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA.
Jenny HsiehDepartment of Molecular Biology and Hamon Center for Regenerative Science and Medicine, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA.

Funding

Diverse Roles of Adult Dentate Gyrus NeurogenesisR01NS081203 · NINDS · NATHAN S. KLINE INSTITUTE FOR PSYCH RES · PI SCHARFMAN, HELEN E · 2013 to 2017
$1.8M
Circuitry mechanisms underlying new neuron development in adult and epileptic brainR01NS089770 · NINDS · STATE UNIVERSITY NEW YORK STONY BROOK · PI GE, SHAOYU, HSIEH, JENNY · 2015 to 2019
$1.8M
Targeting aberrant neurogenesis to prevent epilepsy and associated cognitive declineR01NS093992 · NINDS · UT SOUTHWESTERN MEDICAL CENTER · PI HSIEH, JENNY · 2016 to 2020
$1.7M
Novel Mechanisms of Adult Neurogenesis in Physiological and Pathological ContextsK02AG041815 · NIA · UT SOUTHWESTERN MEDICAL CENTER · PI HSIEH, JENNY · 2012 to 2016
$646k
NIA NIH HHS K02 AG041815NINDS NIH HHS R01 NS081203NINDS NIH HHS R01 NS089770NINDS NIH HHS R01 NS093992
6 · The paper itself

Abstract

Adult hippocampal neural stem cells generate newborn neurons throughout life due to their ability to self-renew and exist as quiescent neural progenitors (QNPs) before differentiating into transit-amplifying progenitors (TAPs) and newborn neurons. The mechanisms that control adult neural stem cell self-renewal are still largely unknown. Conditional knockout of REST (repressor element 1-silencing transcription factor) results in precocious activation of QNPs and reduced neurogenesis over time. To gain insight into the molecular mechanisms by which REST regulates adult neural stem cells, we perform chromatin immunoprecipitation sequencing and RNA-sequencing to identify direct REST target genes. We find REST regulates both QNPs and TAPs, and importantly, ribosome biogenesis, cell cycle and neuronal genes in the process. Furthermore, overexpression of individual REST target ribosome biogenesis or cell cycle genes is sufficient to induce activation of QNPs. Our data define novel REST targets to maintain the quiescent neural stem cell state.

Indexed as

Adult Stem CellsAnimalsCell CycleCell DifferentiationCells, CulturedChromatin ImmunoprecipitationGene Knockout TechniquesGene Regulatory NetworksHigh-Throughput Nucleotide SequencingHippocampusMiceMice, Inbred C57BLMice, TransgenicModels, AnimalNeural Stem CellsNeurogenesisRE1-Silencing Transcription FactorRepressor Proteins

Identifiers

PMID27819263
PMCPMC5103073

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.