ArticleHorticulture research2016
High-density SNP-based genetic maps for the parents of an outcrossed and a selfed tetraploid garden rose cross, inferred from admixed progeny using the 68k rose SNP array.
Article in Horticulture research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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Who cites it
26 citing papers in PubMed, 48 citations in OpenAlex.
- Plastid genomic features and phylogenetic placement in Rosa (Rosaceae) through comparative analysis.BMC plant biology · 2025Article
- Exploring chromosomal variations in garden roses: Insights from high-density SNP array data and a new tool, Qploidy.The plant genome · 2025Article
- Development of a 135K SNP genotyping array for Actinidia arguta and its applications for genetic mapping and QTL analysis in kiwifruit.Plant biotechnology journal · 2023Article
- Diversity analyses in two ornamental and large-genomeFrontiers in plant science · 2023Article
- First genetic maps development and QTL mining inFrontiers in plant science · 2022Article
- Morphological studies of rose prickles provide new insights.Horticulture research · 2021Article
- Analysis of allelic variants of RhMLO genes in rose and functional studies on susceptibility to powdery mildew related to clade V homologs.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Identification and QTL Analysis of Flavonoids and Carotenoids in Tetraploid Roses Based on an Ultra-High-Density Genetic Map.Frontiers in plant science · 2021Article
- Genetic Mapping in Autohexaploid Sweet Potato with Low-Coverage NGS-Based Genotyping Data.G3 (Bethesda, Md.) · 2020Article
- Molecular markers from the chloroplast genome of rose provide a complementary tool for variety discrimination and profiling.Scientific reports · 2020Article
- Article
- Field cress genome mapping: Integrating linkage and comparative maps with cytogenetic analysis for rDNA carrying chromosomes.Scientific reports · 2019Article
- The development of a high-density genetic map significantly improves the quality of reference genome assemblies for rose.Scientific reports · 2019Article
- Current achievements and future prospects in the genetic breeding of chrysanthemum: a review.Horticulture research · 2019Review
- In the name of the rose: a roadmap for rose research in the genome era.Horticulture research · 2019Article
- Comparative transcriptomics identifies patterns of selection in roses.BMC plant biology · 2018Article
- polymapR-linkage analysis and genetic map construction from F1 populations of outcrossing polyploids.Bioinformatics (Oxford, England) · 2018Article
- Genome structure of Rosa multiflora, a wild ancestor of cultivated roses.DNA research : an international journal for rapid publication of reports on genes and genomes · 2018Article
- Article
- Recent progress in whole genome sequencing, high-density linkage maps, and genomic databases of ornamental plants.Breeding science · 2018Review
Corrections and comments
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Authors and funding
11 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Dense genetic maps create a base for QTL analysis of important traits and future implementation of marker-assisted breeding. In tetraploid rose, the existing linkage maps include <300 markers to cover 28 linkage groups (4 homologous sets of 7 chromosomes). Here we used the 68k WagRhSNP Axiom single-nucleotide polymorphism (SNP) array for rose, in combination with SNP dosage calling at the tetraploid level, to genotype offspring from the garden rose cultivar 'Red New Dawn'. The offspring proved to be not from a single bi-parental cross. In rose breeding, crosses with unintended parents occur regularly. We developed a strategy to separate progeny into putative populations, even while one of the parents was unknown, using principle component analysis on pairwise genetic distances based on sets of selected SNP markers that were homozygous, and therefore uninformative for one parent. One of the inferred populations was consistent with self-fertilization of 'Red New Dawn'. Subsequently, linkage maps were generated for a bi-parental and a self-pollinated population with 'Red New Dawn' as the common maternal parent. The densest map, for the selfed parent, had 1929 SNP markers on 25 linkage groups, covering 1765.5 cM at an average marker distance of 0.9 cM. Synteny with the strawberry (
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.