Evidence map›Paper›PMID 27818260›Full record

ArticleCell metabolism2017

Nuclear Proteomics Uncovers Diurnal Regulatory Landscapes in Mouse Liver.

Jingkui Wang, Daniel Mauvoisin, Eva Martin, Florian Atger, Antonio Núñez Galindo, Loïc Dayon, Federico Sizzano, Alessio Palini, Martin Kussmann, Patrice Waridel and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell metabolism, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 120 papers.

0numbers the graph read from it
0cells of the map it votes in
120citing papers in PubMed
9.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

120 citing papers in PubMed, 194 citations in OpenAlex.

  1. Article
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  6. Mutually exclusive alternative pre-mRNA splicing promotes adaptive metabolic stress signaling by JNK.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  17. Circadian clock communication during homeostasis and ageing.Nature reviews. Molecular cell biology · 2025
    Review
  18. Review
  19. Article
  20. Review

60 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Jingkui WangInstitute of Bioengineering, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland.
Daniel MauvoisinDepartment of Diabetes and Circadian Rhythms, Nestlé Institute of Health Sciences, CH-1015 Lausanne, Switzerland.
Eva MartinDepartment of Diabetes and Circadian Rhythms, Nestlé Institute of Health Sciences, CH-1015 Lausanne, Switzerland.
Florian AtgerDepartment of Diabetes and Circadian Rhythms, Nestlé Institute of Health Sciences, CH-1015 Lausanne, Switzerland; Department of Pharmacology and Toxicology, University of Lausanne, CH-1015 Lausanne, Switzerland.
Antonio Núñez GalindoSystems Nutrition, Metabonomics, and Proteomics, Nestlé Institute of Health Sciences, CH-1015 Lausanne, Switzerland.
Loïc DayonSystems Nutrition, Metabonomics, and Proteomics, Nestlé Institute of Health Sciences, CH-1015 Lausanne, Switzerland.
Federico SizzanoDepartment of Cell Biology, Nestlé Institute of Health Sciences, CH-1015 Lausanne, Switzerland.
Alessio PaliniDepartment of Cell Biology, Nestlé Institute of Health Sciences, CH-1015 Lausanne, Switzerland.
Martin KussmannSystems Nutrition, Metabonomics, and Proteomics, Nestlé Institute of Health Sciences, CH-1015 Lausanne, Switzerland.
Patrice WaridelProtein Analysis Facility, University of Lausanne, CH-1015 Lausanne, Switzerland.
Manfredo QuadroniProtein Analysis Facility, University of Lausanne, CH-1015 Lausanne, Switzerland.
Vjekoslav DulićCNRS, UMR 5535, Institut de Génétique Moléculaire de Montpellier, 34090 Montpellier, France.
Felix NaefInstitute of Bioengineering, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland. Electronic address: felix.naef@epfl.ch.
Frédéric GachonDepartment of Diabetes and Circadian Rhythms, Nestlé Institute of Health Sciences, CH-1015 Lausanne, Switzerland; School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, CH-1015 Lausanne, Switzerland. Electronic address: frederic.gachon@rd.nestle.com.
Nestlé (Switzerland) · CHUniversity of Lausanne · CHÉcole Polytechnique Fédérale de Lausanne · CHCentre National de la Recherche Scientifique · FR

Funding

European Research Council 260988
6 · The paper itself

Abstract

Diurnal oscillations of gene expression controlled by the circadian clock and its connected feeding rhythm enable organisms to coordinate their physiologies with daily environmental cycles. While available techniques yielded crucial insights into regulation at the transcriptional level, much less is known about temporally controlled functions within the nucleus and their regulation at the protein level. Here, we quantified the temporal nuclear accumulation of proteins and phosphoproteins from mouse liver by SILAC proteomics. We identified around 5,000 nuclear proteins, over 500 of which showed a diurnal accumulation. Parallel analysis of the nuclear phosphoproteome enabled the inference of the temporal activity of kinases accounting for rhythmic phosphorylation. Many identified rhythmic proteins were parts of nuclear complexes involved in transcriptional regulation, ribosome biogenesis, DNA repair, and the cell cycle and its potentially associated diurnal rhythm of hepatocyte polyploidy. Taken together, these findings provide unprecedented insights into the diurnal regulatory landscape of the mouse liver nucleus.

Indexed as

Circadian RhythmAnimalsCell NucleusCircadian ClocksDNA RepairGene Expression RegulationIsotope LabelingLiverMass SpectrometryMiceMice, KnockoutNuclear ProteinsOrganelle BiogenesisPhosphoproteinsPhosphorylationPolyploidyNuclear ProteinsPhosphoproteinsProtein KinasesProteomeTranscription Factors

Identifiers

PMID27818260
PMCPMC5241201
OpenAlexW2548982769

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.