Evidence map›Paper›PMID 27818101›Full record

ArticleStructure (London, England : 1993)2016

Defining NADH-Driven Allostery Regulating Apoptosis-Inducing Factor.

Chris A Brosey, Chris Ho, Winnie Z Long, Sukrit Singh, Kathryn Burnett, Greg L Hura, Jay C Nix, Gregory R Bowman, Tom Ellenberger, John A Tainer

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 56 citations in OpenAlex.

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  13. Journal of Zhejiang University. Science. B · 2023
    Article
  14. Article
  15. Article
  16. Article
  17. Molecular Mechanisms of Parthanatos and Its Role in Diverse Diseases.International journal of molecular sciences · 2022
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Chris A BroseyBiochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO 63110, USA; Molecular and Cellular Oncology, The University of Texas M.D. Anderson Cancer Center, Houston, TX 77030, USA. Electronic address: cabrosey@mdanderson.org.
Chris HoBiochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO 63110, USA.
Winnie Z LongBiochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO 63110, USA.
Sukrit SinghBiochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO 63110, USA.
Kathryn BurnettMBIB Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Greg L HuraMBIB Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; Chemistry and Biochemistry, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
Jay C NixMolecular Biology Consortium, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Gregory R BowmanBiochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO 63110, USA.
Tom EllenbergerBiochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO 63110, USA.
John A TainerMBIB Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; Molecular and Cellular Oncology, The University of Texas M.D. Anderson Cancer Center, Houston, TX 77030, USA. Electronic address: jtainer@mdanderson.org.
Washington University in St. Louis · USLawrence Berkeley National Laboratory · USMolecular Biology Consortium · USThe University of Texas MD Anderson Cancer Center · US

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
Structural mechanisms of AIF release during poly(ADP-ribose)-induced cell deathF32GM109591 · NIGMS · WASHINGTON UNIVERSITY · PI BROSEY, CHRIS A. · 2014 to 2015
$109k
NCI NIH HHS P01 CA092584NIGMS NIH HHS F32 GM109591
6 · The paper itself

Abstract

Apoptosis-inducing factor (AIF) is critical for mitochondrial respiratory complex biogenesis and for mediating necroptotic parthanatos; these functions are seemingly regulated by enigmatic allosteric switching driven by NADH charge-transfer complex (CTC) formation. Here, we define molecular pathways linking AIF's active site to allosteric switching regions by characterizing dimer-permissive mutants using small-angle X-ray scattering (SAXS) and crystallography and by probing AIF-CTC communication networks using molecular dynamics simulations. Collective results identify two pathways propagating allostery from the CTC active site: (1) active-site H454 links to S480 of AIF's central β-strand to modulate a hydrophobic border at the dimerization interface, and (2) an interaction network links AIF's FAD cofactor, central β-strand, and Cβ-clasp whereby R529 reorientation initiates C-loop release during CTC formation. This knowledge of AIF allostery and its flavoswitch mechanism provides a foundation for biologically understanding and biomedically controlling its participation in mitochondrial homeostasis and cell death.

Indexed as

Allosteric RegulationApoptosis Inducing FactorCatalytic DomainCrystallography, X-RayDimerizationHumansModels, MolecularNADProtein Structure, SecondaryScattering, Small AngleX-Ray DiffractionAIFM1 protein, humanApoptosis Inducing FactorNADallosteryapoptosis-inducing factorcharge-transfer complexflavoswitchmitochondrial homeostasismolecular dynamicsparthanatosSAXSX-ray crystallography

Identifiers

PMID27818101
PMCPMC5143173
OpenAlexW2548455963

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.