Evidence map›Paper›PMID 27815877›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2017

Using Fluorescence Resonance Energy Transfer-Based Biosensors to Probe Rho GTPase Activation During Phagocytosis.

Veronika Miskolci, Louis Hodgson, Dianne Cox

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.4field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. A spatial model of YAP/TAZ signaling reveals how stiffness, dimensionality, and shape contribute to emergent outcomes.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  7. Article
  8. Optogenetics: Rho GTPases Activated by Light in Living Macrophages.Methods in molecular biology (Clifton, N.J.) · 2020
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Veronika MiskolciDepartments of Anatomy and Structural Biology, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY, 10461, USA.
Louis HodgsonDepartments of Anatomy and Structural Biology, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY, 10461, USA. louis.hodgson@einstein.yu.edu.
Dianne CoxDepartments of Anatomy and Structural Biology, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY, 10461, USA. dianne.cox@einstein.yu.edu.
Albert Einstein College of Medicine · US

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI THOMAS E ROHAN · 1985 to 2026
$111.2M
TRAINING PROGRAM IN CELLULAR &MOLEC. BIOLOGY &GENETICST32GM007491 · NIGMS · YESHIVA UNIVERSITY · PI QUERY, CHARLES C · 1985 to 2021
$17.0M
THE ROLE OF CSF-1 MEDIATED MACROPHAGE CHEMOTAXIS IN CARCINOMA CELL INVASIONR01GM071828 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI COX, DIANNE · 2006 to 2014
$2.9M
RhoC GTPase regulates leading edge protrusion dynamics in breast carcinomasR01GM093121 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI HODGSON, LOUIS · 2010 to 2014
$1.6M
NCI NIH HHS P30 CA013330NIGMS NIH HHS R01 GM071828NIGMS NIH HHS R01 GM093121NIGMS NIH HHS T32 GM007491
6 · The paper itself

Abstract

The p21-family members of Rho GTPases are important for the control of actin cytoskeleton dynamics, and are critical regulators of phagocytosis. The three-dimensional structure of phagosomes and the highly compartmentalized nature of the signaling mechanisms during phagocytosis require high-resolution imaging using ratiometric biosensors to decipher Rho GTPase activities regulating phagosome formation and function. Here we describe methods for the expression and ratiometric imaging of FRET-based Rho GTPase biosensors in macrophages during phagocytosis. As an example, we show Cdc42 activity at the phagosome over Z-serial planes. In addition, we demonstrate the usage of a new, fast, and user-friendly deconvolution package that delivers significant improvements in the attainable details of Rho GTPase activity in phagosome structures.

Indexed as

PhagocytosisAnimalsBiosensing Techniquescdc42 GTP-Binding ProteinEnzyme ActivationFluorescence Resonance Energy TransferImaging, Three-DimensionalMacrophagesMiceRAW 264.7 Cellsrho GTP-Binding ProteinsStatistics as Topiccdc42 GTP-Binding Proteinrho GTP-Binding ProteinsBiosensorsDeconvolutionFRETMacrophagesPhagosomeRatiometric imagingZ-stack

Identifiers

PMID27815877
PMCPMC5116239
OpenAlexW2548640736

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.