Evidence map›Paper›PMID 27814948›Full record

ReviewTrends in biochemical sciences2017

The Growing and Glowing Toolbox of Fluorescent and Photoactive Proteins.

Erik A Rodriguez, Robert E Campbell, John Y Lin, Michael Z Lin, Atsushi Miyawaki, Amy E Palmer, Xiaokun Shu, Jin Zhang, Roger Y Tsien

Abstract readReview
In one paragraph

Review in Trends in biochemical sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 319 papers.

0numbers the graph read from it
0cells of the map it votes in
319citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

319 citing papers in PubMed.

  1. Non-Covalent Reversibly Photoconvertible Fluorescent Tags for Wash-Free Protein Labeling.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Absolute quantification of fluorescent protein fusions by mass spectrometry.Protein science : a publication of the Protein Society · 2026
    Article
  13. Article
  14. Plants (Basel, Switzerland) · 2026
    Article
  15. Article
  16. Existence of Causation without Correlation in Transcriptional Networks.bioRxiv : the preprint server for biology · 2026
    Article
  17. Article
  18. Article
  19. Protein engineering: status report.Protein engineering, design & selection : PEDS · 2026
    Review
  20. Article

259 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Erik A RodriguezDepartment of Pharmacology, University of California, San Diego, La Jolla, CA 92093, USA. Electronic address: ear001@ucsd.edu.
Robert E CampbellDepartment of Chemistry, University of Alberta, Edmonton, AB, T6G 2G2, Canada. Electronic address: rc4@ualberta.ca.
John Y LinSchool of Medicine, University of Tasmania, Hobart, TAS 7000, Australia. Electronic address: john.lin@utas.edu.au.
Michael Z LinDepartment of Bioengineering, Stanford University, Stanford, CA, 94305, USA; Department of Pediatrics, Stanford University, Stanford, CA, 94305, USA. Electronic address: mzlin@stanford.edu.
Atsushi MiyawakiLaboratory for Cell Function Dynamics, Brain Science Institute, RIKEN, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan. Electronic address: matsushi@brain.riken.go.jp.
Amy E PalmerDepartment of Chemistry and Biochemistry, BioFrontiers Institute, University of Colorado, Boulder, CO, 80303, USA. Electronic address: amy.palmer@colorado.edu.
Xiaokun ShuDepartment of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA, 94158, USA; Cardiovascular Research Institute, University of California, San Francisco, San Francisco, CA, 94158, USA. Electronic address: xiaokun.shu@ucsf.edu.
Jin ZhangDepartment of Pharmacology, University of California, San Diego, La Jolla, CA 92093, USA. Electronic address: jzhang32@ucsd.edu.
Roger Y TsienDepartment of Pharmacology, University of California, San Diego, La Jolla, CA 92093, USA; Howard Hughes Medical Institute, University of California, San Diego, La Jolla, CA, 92093, USA. Electronic address: rtsien@ucsd.edu.

Funding

IVEM and Image Analysis ResourceP41GM103412 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ELLISMAN, MARK H · 2012 to 2019
$17.9M
Live-cell Activity Architecture in CancerR35CA197622 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Jin Zhang · 2015 to 2026
$11.2M
TRAINING & OUTREACH COREP50GM107615 · NIGMS · STANFORD UNIVERSITY · PI FERRELL, JAMES E. · 2013 to 2017
$10.9M
New Probe and Methods for Correlated LM & EMR01GM086197 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ADAMS, STEPHEN ROY, BOASSA, DANIELA · 2008 to 2020
$8.3M
Mechanisms of Compartmentalized cAMP SignalingR01DK073368 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Jin Zhang · 2006 to 2026
$7.6M
DYNAMICS OF SIGNAL TRANSDUCTION IN NEURONSR01NS027177 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ADAMS, STEPHEN ROY, ELLISMAN, MARK H · 1989 to 2017
$5.8M
Regulation of Cell Signaling by Transition Metal DynamicsDP1GM114863 · NIGMS · UNIVERSITY OF COLORADO · PI PALMER, AMY E · 2014 to 2018
$3.8M
Rational design of a genetically encoded infrared fluorescent protease reporterR01GM115399 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHU, XIAOKUN · 2015 to 2018
$1.3M
Signal Transduction by PI3K/Akt/mTOR PathwayR01GM111665 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ZHANG, JIN · 2015 to 2018
$1.2M
Optogenetic mapping of synaptic activity and control of intracellular signalingU01NS090590 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KLEINFELD, DAVID, LIN, JOHN YU-LUEN · 2014 to 2016
$1.2M
In vivo selection of RNA aptamers that switch on fluorescenceF32GM089114 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI RODRIGUEZ, ERIK ALI · 2009 to 2011
$144k
NCI NIH HHS R35 CA197622NIDDK NIH HHS R01 DK073368NIGMS NIH HHS DP1 GM114863NIGMS NIH HHS F32 GM089114NIGMS NIH HHS P41 GM103412NIGMS NIH HHS P50 GM107615NIGMS NIH HHS R01 GM086197NIGMS NIH HHS R01 GM111665NIGMS NIH HHS R01 GM115399NINDS NIH HHS R01 NS027177NINDS NIH HHS U01 NS090590
6 · The paper itself

Abstract

Over the past 20 years, protein engineering has been extensively used to improve and modify the fundamental properties of fluorescent proteins (FPs) with the goal of adapting them for a fantastic range of applications. FPs have been modified by a combination of rational design, structure-based mutagenesis, and countless cycles of directed evolution (gene diversification followed by selection of clones with desired properties) that have collectively pushed the properties to photophysical and biochemical extremes. In this review, we provide both a summary of the progress that has been made during the past two decades, and a broad overview of the current state of FP development and applications in mammalian systems.

Indexed as

AnimalsBacterial ProteinsHumansLuminescent ProteinsPhytochromeProtein EngineeringBacterial ProteinsLuminescent ProteinsPhytochrome

Identifiers

PMID27814948
PMCPMC5272834

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.