ArticleBMC plant biology2016
Identification by the DArTseq method of the genetic origin of the Coffea canephora cultivated in Vietnam and Mexico.
Article in BMC plant biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
- Development of a SNP Amplicon Panel for Invasive Deer Faecal Pellets and the Effects of Environmental Exposure on Genotyping Success.Ecology and evolution · 2026Article
- Uncovering the historic genetic diversity of Ugandan Robusta coffee germplasm: a foundation for core collection design.BMC plant biology · 2026Article
- Molecular marker applications and functional genomics of drought tolerance in Coffea canephora: a comprehensive review.Molecular biology reports · 2026Review
- Genomic discrimination of the botanical groups conilon and robusta of Coffea canephora.Scientific reports · 2026Article
- Evaluating Kinship Estimation Methods for Reduced-Representation SNP Data in Non-model Species.Molecular ecology resources · 2025Article
- Genetic improvement of robusta coffee (Frontiers in plant science · 2025Review
- Article
- A genomic toolkit for winged bean Psophocarpus tetragonolobus.Nature communications · 2024Article
- Convention on Biological Diversity (CBD) and the Nagoya Protocol: Implications and Compliance Strategies for the Global Coffee Community.Foods (Basel, Switzerland) · 2024Article
- Genome-Wide Admixture Mapping Identifies Wild Ancestry-of-Origin Segments in Cultivated Robusta Coffee.Genome biology and evolution · 2023Article
- A review of the indigenous coffee resources of Uganda and their potential for coffee sector sustainability and development.Frontiers in plant science · 2022Article
- Current population structure and pathogenicity patterns ofMicrobial genomics · 2021Article
- Coffee Berry Borer (Insects · 2020Review
- Discovery of thermophilic Bacillales using reduced-representation genotyping for identification.BMC microbiology · 2020Article
- Resequencing 93 accessions of coffee unveils independent and parallel selection during Coffea species divergence.Plant molecular biology · 2020Article
- Effectiveness of Single Nucleotide Polymorphism Markers in Genotyping Germplasm Collections ofFrontiers in plant science · 2020Article
- Article
- High extinction risk for wild coffee species and implications for coffee sector sustainability.Science advances · 2019Article
- Effective BAC clone anchoring with genotyping-by-sequencing and Diversity Arrays Technology in a large genome cereal rye.Scientific reports · 2018Article
- Landraces of snake melon, an ancient Middle Eastern crop, reveal extensive morphological and DNA diversity for potential genetic improvement.BMC genetics · 2018Article
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe coffee species Coffea canephora is commercially identified as "Conilon" when produced in Brazil, or "Robusta" when produced elsewhere in the world. It represents approximately 40 % of coffee production worldwide. While the genetic diversity of wild C. canephora has been well studied in the past, only few studies have addressed the genetic diversity of currently cultivated varieties around the globe. Vietnam is the largest Robusta producer in the world, while Mexico is the only Latin American country, besides Brazil, that has a significant Robusta production. Knowledge of the genetic origin of Robusta cultivated varieties in countries as important as Vietnam and Mexico is therefore of high interest.
resultsThrough the use of Sequencing-based diversity array technology-DArTseq method-on a collection of C. canephora composed of known accessions and accessions cultivated in Vietnam and Mexico, 4,021 polymorphic SNPs were identified. We used a multivariate analysis using SNP data from reference accessions in order to confirm and further fine-tune the genetic diversity of C. canephora. Also, by interpolating the data obtained for the varieties from Vietnam and Mexico, we determined that they are closely related to each other, and identified that their genetic origin is the Robusta Congo - Uganda group.
conclusionsThe genetic characterization based on SNP markers of the varieties grown throughout the world, increased our knowledge on the genetic diversity of C. canephora, and contributed to the understanding of the genetic background of varieties from very important coffee producers. Given the common genetic origin of the Robusta varieties cultivated in Vietnam, Mexico and Uganda, and the similar characteristics of climatic areas and relatively high altitude where they are grown, we can state that the Vietnamese and the Mexican Robusta have the same genetic potential to produce good cup quality.
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