Evidence map›Paper›PMID 27813264›Full record

ArticleProtein science : a publication of the Protein Society2017

Protein charge determination and implications for interactions in cell extracts.

Ciara Kyne, Kiara Jordon, Dana I Filoti, Thomas M Laue, Peter B Crowley

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. IgG Charge: Practical and Biological Implications.Antibodies (Basel, Switzerland) · 2019
    Article
  5. International journal of molecular sciences · 2019
    Review
  6. Article
  7. Article
  8. Quinary interactions with an unfolded state ensemble.Protein science : a publication of the Protein Society · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Ciara KyneSchool of Chemistry, National University of Ireland, Galway, University Road, Galway, Ireland.
Kiara JordonSpin Analytical, 468 Portland Street, Berwick, Maine, 03901.
Dana I FilotiCentre to Advance Macromolecular Interaction Sciences University of New Hampshire, Durham, New Hampshire, 03824.
Thomas M LaueSpin Analytical, 468 Portland Street, Berwick, Maine, 03901.
Peter B CrowleySchool of Chemistry, National University of Ireland, Galway, University Road, Galway, Ireland.
Analytical Engineering (United States) · USOllscoil na Gaillimhe – University of Galway · IEUniversity of New Hampshire · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Decades of dilute-solution studies have revealed the influence of charged residues on protein stability, solubility and stickiness. Similar characterizations are now required in physiological solutions to understand the effect of charge on protein behavior under native conditions. Toward this end, we used free boundary and native gel electrophoresis to explore the charge of cytochrome c in buffer and in Escherichia coli extracts. We find that the charge of cytochrome c was ∼2-fold lower than predicted from primary structure analysis. Cytochrome c charge was tuned by sulfate binding and was rendered anionic in E. coli extracts due to interactions with macroanions. Mutants in which three or four cationic residues were replaced with glutamate were charge-neutral and "inert" in extracts. A comparison of the interaction propensities of cytochrome c and the mutants emphasizes the role of negative charge in stabilizing physiological environments. Charge-charge repulsion and preferential hydration appear to prevent aggregation. The implications for molecular organization in vivo are discussed.

Indexed as

MutationProtein AggregatesComplex MixturesCytochromes cEscherichia coliEscherichia coli ProteinsComplex MixturesCytochromes cEscherichia coli ProteinsProtein Aggregatescell extractcharge-inverted mutantsmembrane confined electrophoresisnative gel electrophoresisquinary interactionssize exclusion chromatography

Identifiers

PMID27813264
PMCPMC5275725
OpenAlexW2546921702

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.