Evidence map›Paper›PMID 27812351›Full record

ArticleFrontiers in microbiology2016

Taxonomic and Functional Diversity of Soil and Hypolithic Microbial Communities in Miers Valley, McMurdo Dry Valleys, Antarctica.

Sean T S Wei, Donnabella C Lacap-Bugler, Maggie C Y Lau, Tancredi Caruso, Subramanya Rao, Asunción de Los Rios, Stephen K Archer, Jill M Y Chiu, Colleen Higgins, Joy D Van Nostrand and 3 more

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Microbial Biogeochemical Cycling of Nitrogen in Arid Ecosystems.Microbiology and molecular biology reviews : MMBR · 2022
    Review
  8. Article
  9. Roots of the xerophyteSaudi journal of biological sciences · 2022
    Article
  10. Article
  11. Antarctica as a reservoir of planetary analogue environments.Extremophiles : life under extreme conditions · 2021
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Sean T S WeiInstitute for Applied Ecology New Zealand, School of Applied Sciences, Auckland University of Technology Auckland, New Zealand.
Donnabella C Lacap-BuglerInstitute for Applied Ecology New Zealand, School of Applied Sciences, Auckland University of Technology Auckland, New Zealand.
Maggie C Y LauDepartment of Geosciences, Princeton University Princeton, NJ, USA.
Tancredi CarusoSchool of Biological Sciences, Queen's University Belfast Belfast, Northern Ireland.
Subramanya RaoDepartment of Health Technology and Informatics, Hong Kong Polytechnic University Hong Kong, China.
Asunción de Los RiosDepartamento de Biogeoquímica y Ecología Microbiana, Museo Nacional de Ciencias Naturales Madrid, Spain.
Stephen K ArcherInstitute for Applied Ecology New Zealand, School of Applied Sciences, Auckland University of Technology Auckland, New Zealand.
Jill M Y ChiuDepartment of Biology, Hong Kong Baptist University Hong Kong, China.
Colleen HigginsInstitute for Applied Ecology New Zealand, School of Applied Sciences, Auckland University of Technology Auckland, New Zealand.
Joy D Van NostrandDepartment of Microbiology and Plant Biology, Institute for Environmental Genomics, University of Oklahoma Norman, OK, USA.
Jizhong ZhouDepartment of Microbiology and Plant Biology, Institute for Environmental Genomics, University of OklahomaNorman, OK, USA; State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua UniversityBeijing, China; Earth Sciences Division, Lawrence Berkeley National LaboratoryBerkeley, CA, USA.
David W HopkinsSchool of Agriculture, Food and Environment, The Royal Agricultural University Gloucestershire, UK.
Stephen B PointingInstitute for Applied Ecology New Zealand, School of Applied Sciences, Auckland University of TechnologyAuckland, New Zealand; Institute of Nature and Environmental Technology, Kanazawa UniversityKanazawa, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The McMurdo Dry Valleys of Antarctica are an extreme polar desert. Mineral soils support subsurface microbial communities and translucent rocks support development of hypolithic communities on ventral surfaces in soil contact. Despite significant research attention, relatively little is known about taxonomic and functional diversity or their inter-relationships. Here we report a combined diversity and functional interrogation for soil and hypoliths of the Miers Valley in the McMurdo Dry Valleys of Antarctica. The study employed 16S rRNA fingerprinting and high throughput sequencing combined with the GeoChip functional microarray. The soil community was revealed as a highly diverse reservoir of bacterial diversity dominated by actinobacteria. Hypolithic communities were less diverse and dominated by cyanobacteria. Major differences in putative functionality were that soil communities displayed greater diversity in stress tolerance and recalcitrant substrate utilization pathways, whilst hypolithic communities supported greater diversity of nutrient limitation adaptation pathways. A relatively high level of functional redundancy in both soil and hypoliths may indicate adaptation of these communities to fluctuating environmental conditions.

Indexed as

AntarcticacyanobacteriaDry ValleysGeochiphypolithsoil

Identifiers

PMID27812351
PMCPMC5071352

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.