Evidence map›Paper›PMID 27812122›Full record

ArticlePloS one2016

Probing Intracellular Element Concentration Changes during Neutrophil Extracellular Trap Formation Using Synchrotron Radiation Based X-Ray Fluorescence.

Björn De Samber, Maria J Niemiec, Brecht Laforce, Jan Garrevoet, Eva Vergucht, Riet De Rycke, Peter Cloetens, Constantin F Urban, Laszlo Vincze

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  3. A Putative Role for TRPC6 in Immune-Mediated Kidney Injury.International journal of molecular sciences · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 4 countries.

Björn De SamberDepartment of Analytical Chemistry, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0002-6759-4195
Maria J NiemiecDepartment of Clinical Microbiology / MIMS, Umeå University, Umeå, Sweden.
Brecht LaforceDepartment of Analytical Chemistry, Ghent University, Ghent, Belgium.
Jan GarrevoetDESY, Hamburg, Germany.
Eva VerguchtDepartment of Analytical Chemistry, Ghent University, Ghent, Belgium.
Riet De RyckeInflammation Research Centre, VIB and Department of Biomedical Molecular Biology, Ghent University, Ghent, Belgium.
Peter CloetensEuropean Synchrotron Radiation Facility, Grenoble, France.
Constantin F UrbanDepartment of Clinical Microbiology / MIMS, Umeå University, Umeå, Sweden.
Laszlo VinczeDepartment of Analytical Chemistry, Ghent University, Ghent, Belgium.
Ghent University · BEEuropean Synchrotron Radiation Facility · FRLeibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. - Hans-Knöll-Institut (HKI) · DEUmeå University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

High pressure frozen (HPF), cryo-substituted microtome sections of 2 μm thickness containing human neutrophils (white blood cells) were analyzed using synchrotron radiation based X-ray fluorescence (SR nano-XRF) at a spatial resolution of 50 nm. Besides neutrophils from a control culture, we also analyzed neutrophils stimulated for 1-2 h with phorbol myristate acetate (PMA), a substance inducing the formation of so-called Neutrophil Extracellular Traps (or NETs), a defense system again pathogens possibly involving proteins with metal chelating properties. In order to gain insight in metal transport during this process, precise local evaluation of elemental content was performed reaching limits of detection (LODs) of 1 ppb. Mean weight fractions within entire neutrophils, their nuclei and cytoplasms were determined for the three main elements P, S and Cl, but also for the 12 following trace elements: K, Ca, Mn, Fe, Co, Ni, Cu, Zn, Se, Br, Sr and Pb. Statistical analysis, including linear regression provided objective analysis and a measure for concentration changes. The nearly linear Ca and Cl concentration changes in neutrophils could be explained by already known phenomena such as the induction of Ca channels and the uptake of Cl under activation of NET forming neutrophils. Linear concentration changes were also found for P, S, K, Mn, Fe, Co and Se. The observed linear concentration increase for Mn could be related to scavenging of this metal from the pathogen by means of the neutrophil protein calprotectin, whereas the concentration increase of Se may be related to its antioxidant function protecting neutrophils from the reactive oxygen species they produce against pathogens. We emphasize synchrotron radiation based nanoscopic X-ray fluorescence as an enabling analytical technique to study changing (trace) element concentrations throughout cellular processes, provided accurate sample preparation and data-analysis.

Indexed as

SynchrotronsCalciumExtracellular TrapsHumansIntracellular SpaceIronNeutrophilsSpectrometry, X-Ray EmissionTetradecanoylphorbol AcetateZincCalciumIronTetradecanoylphorbol AcetateZinc

Identifiers

PMID27812122
PMCPMC5094720
OpenAlexW2548767167

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.