Evidence map›Paper›PMID 27811086›Full record

ArticleJournal of experimental botany2016

The ratio of Zn to Cd supply as a determinant of metal-homeostasis gene expression in tobacco and its modulation by overexpressing the metal exporter AtHMA4.

Anna Barabasz, Maria Klimecka, Maria Kendziorek, Aleksandra Weremczuk, Anna Ruszczyńska, Ewa Bulska, Danuta Maria Antosiewicz

Abstract read
In one paragraph

Article in Journal of experimental botany, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Tobacco as an efficient metal accumulator.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2023
    Review
  4. Proteome Analysis ofPlants (Basel, Switzerland) · 2023
    Article
  5. Metal Tolerance Protein Encoding Gene Family inPlants (Basel, Switzerland) · 2022
    Article
  6. Suppression ofInternational journal of molecular sciences · 2021
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Functional Analysis ofFrontiers in plant science · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Anna BarabaszUniversity of Warsaw, Faculty of Biology, Institute of Experimental Plant Biology and Biotechnology, Department of Plant Anatomy and Cytology, Miecznikowa str 1, 02-096 Warszawa, Poland.
Maria KlimeckaUniversity of Warsaw, Faculty of Biology, Institute of Experimental Plant Biology and Biotechnology, Department of Plant Anatomy and Cytology, Miecznikowa str 1, 02-096 Warszawa, Poland.
Maria KendziorekUniversity of Warsaw, Faculty of Biology, Institute of Experimental Plant Biology and Biotechnology, Department of Plant Anatomy and Cytology, Miecznikowa str 1, 02-096 Warszawa, Poland.
Aleksandra WeremczukUniversity of Warsaw, Faculty of Biology, Institute of Experimental Plant Biology and Biotechnology, Department of Plant Anatomy and Cytology, Miecznikowa str 1, 02-096 Warszawa, Poland.
Anna RuszczyńskaUniversity of Warsaw, Faculty of Chemistry, Pasteura str. 1, 02-093 Warszawa, Poland.
Ewa BulskaUniversity of Warsaw, Faculty of Chemistry, Pasteura str. 1, 02-093 Warszawa, Poland.
Danuta Maria AntosiewiczUniversity of Warsaw, Faculty of Biology, Institute of Experimental Plant Biology and Biotechnology, Department of Plant Anatomy and Cytology, Miecznikowa str 1, 02-096 Warszawa, Poland dma@biol.uw.edu.pl.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study links changes in the tobacco endogenous metal-homeostasis network caused by transgene expression with engineering of novel features. It also provides insight into the concentration-dependent mutual interactions between Zn and Cd, leading to differences in the metal partitioning between wild-type and transgenic plants. In tobacco, expression of the export protein AtHMA4 modified Zn/Cd root/shoot distribution, but the pattern depended on their concentrations in the medium. To address this phenomenon, the expression of genes identified by suppression subtractive hybridization and the Zn/Cd accumulation pattern were examined upon exposure to six variants of low/high Zn and Cd concentrations. Five tobacco metal-homeostasis genes were identified: NtZIP2, NtZIP4, NtIRT1-like, NtNAS, and NtVTL. In the wild type, their expression depended on combinations of low/high Zn and Cd concentrations; co-ordinated responses of NtZIP1, NtZIP2, and NtVTL were shown in medium containing 4 µM Cd, and at 0.5 µM versus 10 µM Zn. In transgenics, qualitative changes detected for NtZIP1, NtZIP4, NtIRT1-like, and NtVTL are considered crucial for modification of Zn/Cd supply-dependent Zn/Cd root/shoot distribution. Notwithstanding, NtVTL was the most responsive gene in wild-type and transgenic plants under all concentrations of Zn and Cd tested; thus it is a candidate gene for the regulation of metal cross-homeostasis processes involved in engineering new metal-related traits.

Indexed as

Adenosine TriphosphatasesArabidopsis ProteinsCadmiumCation Transport ProteinsGene Expression ProfilingGene Expression Regulation, PlantHomeostasisNicotianaPlant ProteinsPlants, Genetically ModifiedReal-Time Polymerase Chain ReactionSequence Analysis, DNASubtractive Hybridization TechniquesZincAdenosine TriphosphatasesArabidopsis ProteinsCadmiumCation Transport ProteinsHMA4 protein, ArabidopsisPlant ProteinsZincAtHMA4cadmiumSSHtobaccotransformationzinc.

Identifiers

PMID27811086
PMCPMC5100030

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.