Evidence map›Paper›PMID 27810911›Full record

ArticleThe Journal of cell biology2016

The mitochondrial protein CHCHD2 primes the differentiation potential of human induced pluripotent stem cells to neuroectodermal lineages.

Lili Zhu, Aurora Gomez-Duran, Gabriele Saretzki, Shibo Jin, Katarzyna Tilgner, Dario Melguizo-Sanchis, Georgios Anyfantis, Jumana Al-Aama, Ludovic Vallier, Patrick Chinnery and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 49 citations in OpenAlex.

  1. Pooled it
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  12. Variation of DNA methylation on theRegenerative therapy · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Lili ZhuInstitute of Genetic Medicine, Newcastle University, Newcastle NE1 3BZ, England, UK.ORCID http://orcid.org/0000-0002-1054-1359
Aurora Gomez-DuranInstitute of Genetic Medicine, Newcastle University, Newcastle NE1 3BZ, England, UK.
Gabriele SaretzkiInstitute for Ageing and Health, Newcastle University, Newcastle NE1 3BZ, England, UK.ORCID http://orcid.org/0000-0003-2100-8223
Shibo JinInstitute of Genetic Medicine, Newcastle University, Newcastle NE1 3BZ, England, UK.ORCID http://orcid.org/0000-0003-3514-4605
Katarzyna TilgnerWellcome Trust-Medical Research Council Stem Cell Institute, Hinxton, Cambridge CB10 1SA, England, UK.
Dario Melguizo-SanchisInstitute of Genetic Medicine, Newcastle University, Newcastle NE1 3BZ, England, UK.ORCID http://orcid.org/0000-0002-5728-4345
Georgios AnyfantisInstitute of Genetic Medicine, Newcastle University, Newcastle NE1 3BZ, England, UK.ORCID http://orcid.org/0000-0001-5647-3841
Jumana Al-AamaPrincess Al Jawhara Al-Brahim Center of Excellence in Research of Hereditary Disorders, King Abdulaziz University, Jeddah 21589, Saudi Arabia.
Ludovic VallierWellcome Trust-Medical Research Council Stem Cell Institute, Hinxton, Cambridge CB10 1SA, England, UK.
Patrick ChinneryWellcome Trust Centre for Mitochondrial Research, Institute of Genetic Medicine, Newcastle University, Newcastle NE1 3BZ, England, UK.
Majlinda LakoInstitute of Genetic Medicine, Newcastle University, Newcastle NE1 3BZ, England, UK lyle.armstrong@ncl.ac.uk majlinda.lako@ncl.ac.uk.ORCID http://orcid.org/0000-0003-1327-8573
Lyle ArmstrongInstitute of Genetic Medicine, Newcastle University, Newcastle NE1 3BZ, England, UK lyle.armstrong@ncl.ac.uk majlinda.lako@ncl.ac.uk.ORCID http://orcid.org/0000-0002-7234-9362
Newcastle University · GBWellcome Centre for Mitochondrial Research · GBWellcome/MRC Cambridge Stem Cell Institute · GBKing Abdulaziz University · SA

Funding

Biotechnology and Biological Sciences Research Council BB/E012841/1European Research Council 614620Medical Research Council G0301182Medical Research Council MC_PC_12009
6 · The paper itself

Abstract

Human induced pluripotent stem cell (hiPSC) utility is limited by variations in the ability of these cells to undergo lineage-specific differentiation. We have undertaken a transcriptional comparison of human embryonic stem cell (hESC) lines and hiPSC lines and have shown that hiPSCs are inferior in their ability to undergo neuroectodermal differentiation. Among the differentially expressed candidates between hESCs and hiPSCs, we identified a mitochondrial protein, CHCHD2, whose expression seems to correlate with neuroectodermal differentiation potential of pluripotent stem cells. We provide evidence that hiPSC variability with respect to CHCHD2 expression and differentiation potential is caused by clonal variation during the reprogramming process and that CHCHD2 primes neuroectodermal differentiation of hESCs and hiPSCs by binding and sequestering SMAD4 to the mitochondria, resulting in suppression of the activity of the TGFβ signaling pathway. Using CHCHD2 as a marker for assessing and comparing the hiPSC clonal and/or line differentiation potential provides a tool for large scale differentiation and hiPSC banking studies.

Indexed as

Cell DifferentiationCell LineageApoptosisBase SequenceCell LineCell MovementCell SurvivalCellular ReprogrammingDNA-Binding ProteinsGene Expression ProfilingHuman Embryonic Stem CellsHumansInduced Pluripotent Stem CellsMitochondriaMitochondrial ProteinsNeural PlateCHCHD2 protein, humanDNA-Binding ProteinsMitochondrial ProteinsRNA, MessengerTranscription FactorsTransforming Growth Factor beta

Identifiers

PMID27810911
PMCPMC5084643
OpenAlexW2534906492

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.