Evidence map›Paper›PMID 27810495›Full record

ArticleHuman immunology2017

Psoriasis risk SNPs and their association with HIV-1 control.

Joanne Nititham, Rashmi Gupta, Xue Zeng, Wendy Hartogensis, Douglas F Nixon, Steven G Deeks, Frederick M Hecht, Wilson Liao

Open access · greenAbstract read
In one paragraph

Article in Human immunology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Inflammatory dermatoses in human immunodeficiency virus.Indian journal of sexually transmitted diseases and AIDS
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Joanne NitithamDepartment of Dermatology, University of California San Francisco, San Francisco, CA, USA.
Rashmi GuptaDepartment of Dermatology, University of California San Francisco, San Francisco, CA, USA.
Xue ZengDepartment of Dermatology, University of California San Francisco, San Francisco, CA, USA.
Wendy HartogensisDivision of HIV/AIDS, Department of Medicine, San Francisco General Hospital, University of California San Francisco, San Francisco, CA, USA.
Douglas F NixonDepartment of Microbiology, Immunology and Tropical Medicine, The George Washington University, Washington, DC, USA.
Steven G DeeksDivision of HIV/AIDS, Department of Medicine, San Francisco General Hospital, University of California San Francisco, San Francisco, CA, USA.
Frederick M HechtDivision of HIV/AIDS, Department of Medicine, San Francisco General Hospital, University of California San Francisco, San Francisco, CA, USA.
Wilson LiaoDepartment of Dermatology, University of California San Francisco, San Francisco, CA, USA. Electronic address: wilson.liao@ucsf.edu.
University of California, San Francisco · USGeorge Washington University · USSan Francisco General Hospital · US

Funding

Unsolicited R24 for the CFAR-Network of Integrated Clinical Sciences, CNICSR24AI067039 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Michael S. Saag · 2006 to 2026
$99.4M
Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MALLORY O JOHNSON · 1988 to 2026
$93.6M
Virology CoreP30AI027767 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Latesha Ellen Elopre · 1988 to 2026
$84.1M
Transmission and Persistence of CTL and Drug Resistance MutationsP01AI071713 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HECHT, FREDERICK M · 2007 to 2011
$14.3M
MHC and KIR Region Genomics in PsoriasisU01AI119125 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIAO, WILSON · 2015 to 2019
$3.5M
Genome-Wide Association Study of HIV-1 Host Genetics Among Injection Drug UsersR01DA026141 · NIDA · RESEARCH TRIANGLE INSTITUTE · PI JOHNSON, ERIC OTTO · 2008 to 2012
$3.5M
SYRINGE EXCHANGE PEER MOBILIZATION INTERVENTIONR01DA009532 · NIDA · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI EDLIN, BRIAN R. · 1995 to 2004
$3.0M
Mentoring and Research in Integrative MedicineK24AT007827 · NCCIH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HECHT, FREDERICK M · 2013 to 2022
$1.8M
Identification of Causal Variants in PsoriasisR01AR065174 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIAO, WILSON · 2013 to 2016
$1.8M
NCCIH NIH HHS K24 AT007827NHGRI NIH HHS HHSN268200782096CNIAID NIH HHS P01 AI071713NIAID NIH HHS P30 AI027763NIAID NIH HHS P30 AI027767NIAID NIH HHS R24 AI067039NIAID NIH HHS U01 AI119125NIAMS NIH HHS R01 AR065174NIDA NIH HHS R01 DA009532NIDA NIH HHS R01 DA026141
6 · The paper itself

Abstract

Human evolution has resulted in selection for genetic polymorphisms beneficial in the defense against pathogens. However, such polymorphisms may have the potential to heighten the risk of autoimmune disease. Here, we investigated whether psoriasis-associated single nucleotide polymorphisms influence host control of HIV-1 infection. We studied psoriasis and viral immune response variants in three HIV-positive cohorts: (1) HIV-1 controllers and non-controllers in the Study of the Consequences of the Protease Inhibitor Era (SCOPE) cohort (n=366), (2) Individuals with primary HIV infection in the Options cohort (n=675), and (3) HIV-positive injection drug users from the Urban Health Study (UHS) (n=987). We found a strong association of two psoriasis MHC variants, rs9264942 and rs3021366, with both HIV-1 controller status and viral load, and identified another Class III MHC variant rs9368699 to be strongly associated with viral load. A number of genetic variants outside the MHC (SOX5, TLR9, SDC4, PROX1, IL12B, TLR4, MBL-2, TYK2, IFIH1) demonstrated nominal significance. Overall, our data suggest that several psoriasis variants within the MHC have a robust impact on HIV-1 control, while variants outside the MHC require further investigation.

Indexed as

Viral LoadAdultAsymptomatic DiseasesCohort StudiesFemaleGenetic Predisposition to DiseaseGenotypeHIV-1HIV InfectionsHLA AntigensHumansLinkage DisequilibriumMaleMiddle AgedPolymorphism, Single NucleotidePsoriasisHLA AntigensGeneticsHIVImmunogeneticsMHCPrimary infectionPsoriasisViral controlViral load

Identifiers

PMID27810495
PMCPMC5253078
OpenAlexW2548369642

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.