Evidence map›Paper›PMID 27809912›Full record

ArticleRetrovirology2016

Frequency and Env determinants of HIV-1 subtype C strains from antiretroviral therapy-naive subjects that display incomplete inhibition by maraviroc.

Katharina Borm, Martin R Jakobsen, Kieran Cashin, Jacqueline K Flynn, Paula Ellenberg, Lars Ostergaard, Benhur Lee, Melissa J Churchill, Michael Roche, Paul R Gorry

Open access · goldAbstract read
In one paragraph

Article in Retrovirology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
0.5field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 5 citations in OpenAlex.

  1. Pooled it
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  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 3 countries.

Katharina BormCenter for Biomedical Research, Burnet Institute, Melbourne, VIC, Australia.
Martin R JakobsenDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.
Kieran CashinSchool of Health and Biomedical Sciences, College of Science, Engineering and Health, RMIT University, Melbourne, VIC, 3001, Australia.
Jacqueline K FlynnCenter for Biomedical Research, Burnet Institute, Melbourne, VIC, Australia.
Paula EllenbergCenter for Biomedical Research, Burnet Institute, Melbourne, VIC, Australia.
Lars OstergaardDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.
Benhur LeeIcahn School of Medicine at Mount Sinai, New York, NY, USA.
Melissa J ChurchillCenter for Biomedical Research, Burnet Institute, Melbourne, VIC, Australia.
Michael RocheCenter for Biomedical Research, Burnet Institute, Melbourne, VIC, Australia. michael.roche@unimelb.edu.au.
Paul R GorryCenter for Biomedical Research, Burnet Institute, Melbourne, VIC, Australia. paul.gorry@rmit.edu.au.
RMIT University · AUAarhus University · DKBurnet Institute · AUIcahn School of Medicine at Mount Sinai · USLa Trobe University · AUMonash University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundEntry of human immunodeficiency virus type 1 (HIV-1) into cells involves the interaction of the viral gp120 envelope glycoproteins (Env) with cellular CD4 and a secondary coreceptor, which is typically one of the chemokine receptors CCR5 or CXCR4. CCR5-using (R5) HIV-1 strains that display reduced sensitivity to CCR5 antagonists can use antagonist-bound CCR5 for entry. In this study, we investigated whether naturally occurring gp120 alterations in HIV-1 subtype C (C-HIV) variants exist in antiretroviral therapy (ART)-naïve subjects that may influence their sensitivity to the CCR5 antagonist maraviroc (MVC).

resultsUsing a longitudinal panel of 244 R5 Envs cloned from 20 ART-naïve subjects with progressive C-HIV infection, we show that 40% of subjects (n = 8) harbored viruses that displayed incomplete inhibition by MVC, as shown by plateau's of reduced maximal percent inhibitions (MPIs). Specifically, when pseudotyped onto luciferase reporter viruses, 16 Envs exhibited MPIs below 98% in NP2-CCR5 cells (range 79.7-97.3%), which were lower still in 293-Affinofile cells that were engineered to express high levels of CCR5 (range 15.8-72.5%). We further show that Envs exhibiting reduced MPIs to MVC utilized MVC-bound CCR5 less efficiently than MVC-free CCR5, which is consistent with the mechanism of resistance to CCR5 antagonists that can occur in patients failing therapy. Mutagenesis studies identified strain-specific mutations in the gp120 V3 loop that contributed to reduced MPIs to MVC.

conclusionsThe results of our study suggest that some ART-naïve subjects with C-HIV infection harbor HIV-1 with reduced MPIs to MVC, and demonstrate that the gp120 V3 loop region contributes to this phenotype.

Indexed as

Antiretroviral Therapy, Highly ActiveCCR5 Receptor AntagonistsCD4 AntigensCyclohexanesHEK293 CellsHIV-1HIV Envelope Protein gp120HIV InfectionsHumansMaravirocMutagenesisPeptide FragmentsReceptors, CCR5TriazolesVirus InternalizationCCR5 Receptor AntagonistsCD4 AntigensCyclohexanesHIV Envelope Protein gp120HIV envelope protein gp120 (305-321)MaravirocPeptide FragmentsReceptors, CCR5TriazolesCCR5Envgp120HIV-1MaravirocSubtype C

Identifiers

PMID27809912
PMCPMC5093974
OpenAlexW2548239799

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.