Evidence map›Paper›PMID 27809759›Full record

ArticleBMC genomics2016

Analysis of the genomic sequences and metabolites of Serratia surfactantfaciens sp. nov. YD25

Chun Su, Zhaoju Xiang, Yibo Liu, Xinqing Zhao, Yan Sun, Zhi Li, Lijun Li, Fan Chang, Tianjun Chen, Xinrong Wen and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 71 citations in OpenAlex.

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  13. Genome-resolved analysis of Serratia marcescens strain SMTT infers niche specialization as a hydrocarbon-degrader.DNA research : an international journal for rapid publication of reports on genes and genomes · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Chun SuCollege of Life Sciences, Shaanxi Normal University, Xi'an, 710119, People's Republic of China.
Zhaoju XiangCollege of Life Sciences, Shaanxi Normal University, Xi'an, 710119, People's Republic of China.
Yibo LiuCollege of Life Sciences, Shaanxi Normal University, Xi'an, 710119, People's Republic of China.
Xinqing ZhaoSchool of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200000, China.
Yan SunCollege of Life Sciences, Shaanxi Normal University, Xi'an, 710119, People's Republic of China. sunyan@snnu.edu.cn.
Zhi LiCollege of Life Sciences, Shaanxi Normal University, Xi'an, 710119, People's Republic of China. lizhi@snnu.edu.cn.
Lijun LiCollege of Food and Biological Engineering, Jimei University, Xiamen, 361000, China.
Fan ChangCollege of Life Sciences, Shaanxi Normal University, Xi'an, 710119, People's Republic of China.
Tianjun ChenCollege of Life Sciences, Shaanxi Normal University, Xi'an, 710119, People's Republic of China.
Xinrong WenCollege of Life Sciences, Shaanxi Normal University, Xi'an, 710119, People's Republic of China.
Yidan ZhouCollege of Life Sciences, Shaanxi Normal University, Xi'an, 710119, People's Republic of China.
Furong ZhaoCollege of Life Sciences, Shaanxi Normal University, Xi'an, 710119, People's Republic of China.
Shaanxi Normal University · CNJimei University · CNShanghai Jiao Tong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGram-negative bacteria of the genus Serratia are potential producers of many useful secondary metabolites, such as prodigiosin and serrawettins, which have potential applications in environmental bioremediation or in the pharmaceutical industry. Several Serratia strains produce prodigiosin and serrawettin W1 as the main bioactive compounds, and the biosynthetic pathways are co-regulated by quorum sensing (QS). In contrast, the Serratia strain, which can simultaneously produce prodigiosin and serrawettin W2, has not been reported. This study focused on analyzing the genomic sequence of Serratia sp. strain YD25

resultsA hybrid polyketide synthases (PKS)-non-ribosomal peptide synthetases (NRPS) gene cluster putatively involved in biosynthesis of antimicrobial serrawettin W2 was identified in the genome of YD25

conclusionGenomic sequence and metabolite analysis of Serratia surfactantfaciens YD25

Indexed as

Genome, BacterialGenomicsMetabolomeMetabolomicsAnti-Bacterial AgentsComputational BiologyData MiningFatty AcidsLipoproteinsMultigene FamilyPeptides, CyclicPhenotypePhylogenyProdigiosinQuorum SensingSerratiaAnti-Bacterial AgentsFatty AcidsLipoproteinsPeptides, CyclicProdigiosinserrawettin W2Antimicrobial activityGenome comparisonsNon-ribosomal peptide synthetasesPolyphasic taxonomyQuorum sensingSerratiaSerrawettin W2

Identifiers

PMID27809759
PMCPMC5094094
OpenAlexW2548115856

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.