Evidence map›Paper›PMID 27809314›Full record

ArticleNature protocols2016

T-REX on-demand redox targeting in live cells.

Saba Parvez, Marcus J C Long, Hong-Yu Lin, Yi Zhao, Joseph A Haegele, Vanha N Pham, Dustin K Lee, Yimon Aye

Abstract read
In one paragraph

Article in Nature protocols, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed.

  1. Article
  2. Review
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  5. Review
  6. Role of RNA Splicing in Regulation of Cancer Stem Cell.Current stem cell research & therapy · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Function-guided proximity mapping unveils electrophilic-metabolite sensing by proteins not present in their canonical locales.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. Article
  12. Recent biomedical advances enabled by HaloTag technology.Biocell : official journal of the Sociedades Latinoamericanas de Microscopia Electronica ... et. al · 2022
    Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Saba ParvezDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, New York, USA.
Marcus J C LongDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, New York, USA.
Hong-Yu LinDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, New York, USA.
Yi ZhaoDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, New York, USA.
Joseph A HaegeleDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, New York, USA.
Vanha N PhamDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, New York, USA.
Dustin K LeeDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, New York, USA.
Yimon AyeDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, New York, USA.

Funding

CHEMISTRY OF BIOLOGICAL SYSTEMST32GM008500 · NIGMS · CORNELL UNIVERSITY ITHACA · PI LIN, HENING · 1996 to 2020
$5.4M
Deconvoluting Redox Biology with Targeted ChemistryDP2GM114850 · NIGMS · CORNELL UNIVERSITY · PI AYE, YIMON · 2014 to 2014
$2.3M
Zeiss LSM710 Confocal Microscope for Shared Imaging FacilityS10RR025502 · NCRR · CORNELL UNIVERSITY · PI WILLIAMS, REBECCA M · 2009 to 2009
$500k
NCRR NIH HHS S10 RR025502NIGMS NIH HHS DP2 GM114850NIGMS NIH HHS T32 GM008500
6 · The paper itself

Abstract

This protocol describes targetable reactive electrophiles and oxidants (T-REX)-a live-cell-based tool designed to (i) interrogate the consequences of specific and time-resolved redox events, and (ii) screen for bona fide redox-sensor targets. A small-molecule toolset comprising photocaged precursors to specific reactive redox signals is constructed such that these inert precursors specifically and irreversibly tag any HaloTag-fused protein of interest (POI) in mammalian and Escherichia coli cells. Syntheses of the alkyne-functionalized endogenous reactive signal 4-hydroxynonenal (HNE(alkyne)) and the HaloTag-targetable photocaged precursor to HNE(alkyne) (also known as Ht-PreHNE or HtPHA) are described. Low-energy light prompts photo-uncaging (t

Indexed as

Signal TransductionAldehydesAmino Acid SequenceBlotting, WesternCell SurvivalCytological TechniquesEscherichia coliHEK293 CellsHumansKineticsOxidantsOxidation-Reduction4-hydroxy-2-nonenalAldehydesOxidants

Identifiers

PMID27809314
PMCPMC5260244

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.