Evidence map›Paper›PMID 27808266›Full record

ArticleScientific reports2016

Integrative omics connects N-glycoproteome-wide alterations with pathways and regulatory events in induced pluripotent stem cells.

Putty-Reddy Sudhir, Madireddy Pavana Kumari, Wei-Ting Hsu, Chein-Hung Chen, Hung-Chih Kuo, Chung-Hsuan Chen

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Putty-Reddy SudhirGenomics Research Center, Academia Sinica, Taipei 11529, Taiwan.
Madireddy Pavana KumariGenomics Research Center, Academia Sinica, Taipei 11529, Taiwan.
Wei-Ting HsuInstitute of Cellular and Organismic Biology, Academia Sinica, Taipei 11529, Taiwan.
Chein-Hung ChenGenomics Research Center, Academia Sinica, Taipei 11529, Taiwan.
Hung-Chih KuoGenomics Research Center, Academia Sinica, Taipei 11529, Taiwan.
Chung-Hsuan ChenGenomics Research Center, Academia Sinica, Taipei 11529, Taiwan.
Genomics Research Center, Academia Sinica · TWInstitute of Cellular and Organismic Biology, Academia Sinica · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Molecular-level differences ranging from genomes to proteomes, but not N-glycoproteomes, between human induced pluripotent stem cells (hiPSCs) and embryonic stem cells (hESCs) have been assessed to gain insights into cell reprogramming and induced pluripotency. Our multiplexed quantitative N-glycoproteomics study identified altered N-glycoproteins that significantly regulate cell adhesion processes in hiPSCs compared to hESCs. The integrative proteomics and functional network analyses of the altered N-glycoproteins revealed their significant interactions with known PluriNet (pluripotency-associated network) proteins. We found that these interactions potentially regulate various signaling pathways including focal adhesion, PI3K-Akt signaling, regulation of actin cytoskeleton, and spliceosome. Furthermore, the integrative transcriptomics analysis revealed that imperfectly reprogrammed subunits of the oligosaccharyltransferase (OST) and dolichol-phosphate-mannose synthase (DPM) complexes were potential candidate regulatory events for the altered N-glycoprotein levels. Together, the results of our study suggest that imperfect reprogramming of the protein complexes linked with the N-glycosylation process may result in N-glycoprotein alterations that affect induced pluripotency through their functional protein interactions.

Indexed as

Cell LineCellular ReprogrammingGlycoproteinsHuman Embryonic Stem CellsHumansInduced Pluripotent Stem CellsProteomeProteomicsSignal TransductionStaining and LabelingTranscriptomeGlycoproteinsProteome

Identifiers

PMID27808266
PMCPMC5093713
OpenAlexW2547721459

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.