Evidence map›Paper›PMID 27808171›Full record

ArticleScientific reports2016

Using genome-wide CRISPR library screening with library resistant DCK to find new sources of Ara-C drug resistance in AML.

Morito Kurata, Susan K Rathe, Natashay J Bailey, Natalie K Aumann, Justine M Jones, G Willemijn Veldhuijzen, Branden S Moriarity, David A Largaespada

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 74 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Morito KurataMasonic Cancer Center, University of Minnesota, Minneapolis, MN, USA.
Susan K RatheMasonic Cancer Center, University of Minnesota, Minneapolis, MN, USA.
Natashay J BaileyMasonic Cancer Center, University of Minnesota, Minneapolis, MN, USA.
Natalie K AumannMasonic Cancer Center, University of Minnesota, Minneapolis, MN, USA.
Justine M JonesMasonic Cancer Center, University of Minnesota, Minneapolis, MN, USA.
G Willemijn VeldhuijzenMasonic Cancer Center, University of Minnesota, Minneapolis, MN, USA.
Branden S MoriarityMasonic Cancer Center, University of Minnesota, Minneapolis, MN, USA.
David A LargaespadaMasonic Cancer Center, University of Minnesota, Minneapolis, MN, USA.
University of Minnesota Medical Center · USTokyo Medical and Dental University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Acute myeloid leukemia (AML) can display de novo or acquired resistance to cytosine arabinoside (Ara-C), a primary component of induction chemotherapy. To identify genes capable of independently imposing Ara-C resistance, we applied a genome-wide CRISPR library to human U937 cells and exposed to them to Ara-C. Interestingly, all drug resistant clones contained guide RNAs for DCK. To avoid DCK gene modification, gRNA resistant DCK cDNA was created by the introduction of silent mutations. The CRISPR screening was repeated using the gRNA resistant DCK, and loss of SLC29A was identified as also being capable of conveying Ara-C drug resistance. To determine if loss of Dck results in increased sensitivity to other drugs, we conducted a screen of 446 FDA approved drugs using two Dck-defective BXH-2 derived murine AML cell lines and their Ara-C sensitive parental lines. Both cell lines showed an increase in sensitivity to prednisolone. Guide RNA resistant cDNA rescue was a legitimate strategy and multiple DCK or SLC29A deficient human cell clones were established with one clone becoming prednisolone sensitive. Dck-defective leukemic cells may become prednisolone sensitive indicating prednisolone may be an effective adjuvant therapy in some cases of DCK-negative AML.

Indexed as

Gene LibraryGenetic TestingGenome, HumanAnimalsBase SequenceCell LineClone CellsClustered Regularly Interspaced Short Palindromic RepeatsCytarabineDeoxycytidine KinaseDexamethasoneDNA, ComplementaryDrug Resistance, NeoplasmEquilibrative Nucleoside Transporter 1Genetic LociGlucocorticoidsCytarabineDeoxycytidine KinaseDexamethasoneDNA, ComplementaryEquilibrative Nucleoside Transporter 1GlucocorticoidsPrednisoloneReceptors, GlucocorticoidRNA, Guide, CRISPR-Cas Systems

Identifiers

PMID27808171
PMCPMC5093682
OpenAlexW2548203165

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.