Evidence map›Paper›PMID 27806280›Full record

ArticleBiophysical journal2016

Influence of Ganglioside GM1 Concentration on Lipid Clustering and Membrane Properties and Curvature.

Dhilon S Patel, Soohyung Park, Emilia L Wu, Min Sun Yeom, Göran Widmalm, Jeffery B Klauda, Wonpil Im

Abstract read
In one paragraph

Article in Biophysical journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Injectable biodegradable microcarriers for iPSC expansion and cardiomyocyte differentiation.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Recombination betweenAnalytical chemistry · 2022
    Article
  11. Article
  12. Article
  13. Glycocalyx Curving the Membrane: Forces Emerging from the Cell Exterior.Annual review of cell and developmental biology · 2021
    Review
  14. Article
  15. Article
  16. Review
  17. Computer simulations of protein-membrane systems.Progress in molecular biology and translational science · 2020
    Article
  18. Article
  19. Article
  20. Importance of Lipids for Nervous System Integrity: Cooperation between Gangliosides and Sulfatides in Myelin Stability.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Dhilon S PatelDepartment of Biological Sciences and Bioengineering Program, Lehigh University, Bethlehem, Pennsylvania.
Soohyung ParkDepartment of Biological Sciences and Bioengineering Program, Lehigh University, Bethlehem, Pennsylvania.
Emilia L WuDepartment of Biological Sciences and Bioengineering Program, Lehigh University, Bethlehem, Pennsylvania.
Min Sun YeomKorean Institute of Science and Technology Information, Daejeon, Korea.
Göran WidmalmDepartment of Organic Chemistry, Arrhenius Laboratory, Stockholm University, Stockholm, Sweden.
Jeffery B KlaudaDepartment of Chemical and Biomolecular Engineering, University of Maryland, College Park, Maryland; Biophysics Program, University of Maryland, College Park, Maryland. Electronic address: jbklauda@umd.edu.
Wonpil ImDepartment of Biological Sciences and Bioengineering Program, Lehigh University, Bethlehem, Pennsylvania. Electronic address: wonpil@lehigh.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gangliosides are a class of glycosphingolipids (GSLs) with amphiphilic character that are found at the outer leaflet of the cell membranes, where their ability to organize into special domains makes them vital cell membrane components. However, a molecular understanding of GSL-rich membranes in terms of their clustered organization, stability, and dynamics is still elusive. To gain molecular insight into the organization and dynamics of GSL-rich membranes, we performed all-atom molecular-dynamics simulations of bicomponent ganglioside GM1 in 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) phospholipid bilayers with varying concentrations of GM1 (10%, 20%, and 30%). Overall, the simulations show very good agreement with available experimental data, including x-ray electron density profiles along the membrane normal, NMR carbohydrate proton-proton distances, and x-ray crystal structures. This validates the quality of our model systems for investigating GM1 clustering through an ordered-lipid-cluster analysis. The increase in GM1 concentration induces tighter lipid packing, driven mainly by inter-GM1 carbohydrate-carbohydrate interactions, leading to a greater preference for the positive curvature of GM1-containing membranes and larger cluster sizes of ordered-lipid clusters (with a composite of GM1 and POPC). These clusters tend to segregate and form a large percolated cluster at a 30% GM1 concentration at 293 K. At a higher temperature of 330 K, however, the segregation is not maintained.

Indexed as

Carbohydrate ConformationCell MembraneDose-Response Relationship, DrugG(M1) GangliosideHydrogen BondingHydrophobic and Hydrophilic InteractionsLipid BilayersMembrane LipidsMolecular Dynamics SimulationOligosaccharidesTemperatureG(M1) GangliosideLipid BilayersMembrane LipidsOligosaccharides

Identifiers

PMID27806280
PMCPMC5103008

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.