Evidence map›Paper›PMID 27805032›Full record

ArticleScientific reports2016

Understanding the immune system architecture and transcriptome responses to southern rice black-streaked dwarf virus in Sogatella furcifera.

Lin Wang, Nan Tang, Xinlei Gao, Dongyang Guo, Zhaoxia Chang, Yating Fu, Ibukun A Akinyemi, Qingfa Wu

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Immune Responses and Transcriptomic Analysis ofPlants (Basel, Switzerland) · 2023
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. The Use of Engineered Plant Viruses in aFrontiers in plant science · 2020
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Lin WangSchool of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230027, China.
Nan TangSchool of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230027, China.
Xinlei GaoSchool of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230027, China.
Dongyang GuoSchool of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230027, China.
Zhaoxia ChangSchool of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230027, China.
Yating FuSchool of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230027, China.
Ibukun A AkinyemiSchool of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230027, China.
Qingfa WuSchool of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230027, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sogatella furcifera, the white-backed planthopper (WBPH), has become one of the most destructive pests in rice production owing to its plant sap-sucking behavior and efficient transmission of Southern rice black-streaked dwarf virus (SRBSDV) in a circulative, propagative and persistent manner. The dynamic and complex SRBSDV-WBPH-rice plant interaction is still poorly understood. In this study, based on a homology-based genome-wide analysis, 348 immune-related genes belonging to 28 families were identified in WBPH. A transcriptome analysis of non-viruliferous (NVF) and viruliferous groups with high viral titers (HVT) and median viral titers (MVT) revealed that feeding on SRBSDV-infected rice plants has a significant impact on gene expression, regardless of viral titers in insects. We identified 278 up-regulated and 406 down-regulated genes shared among the NVF, MVT, and HVT groups and detected significant down-regulation of primary metabolism-related genes and oxidoreductase. In viruliferous WBPH with viral titer-specific transcriptome changes, 1,906 and 1,467 genes exhibited strict monotonically increasing and decreasing expression, respectively. The RNAi pathway was the major antiviral response to increasing viral titers among diverse immune responses. These results clarify the responses of immune genes and the transcriptome of WBPH to SRBSDV and improve our knowledge of the functional relationship between pathogen, vector, and host.

Indexed as

TranscriptomeAnimalsGene Expression Regulation, PlantGene OntologyHemipteraHost-Pathogen InteractionsImmune SystemImmunityInsect VectorsOryzaPlant DiseasesReoviridaeSignal TransductionViral Load

Identifiers

PMID27805032
PMCPMC5090245

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.