Evidence map›Paper›PMID 27805018›Full record

ArticleScientific reports2016

Genome-wide analyses reveal a highly conserved Dengue virus envelope peptide which is critical for virus viability and antigenic in humans.

Renata C Fleith, Francisco P Lobo, Paula F Dos Santos, Mariana M Rocha, Juliano Bordignon, Daisy M Strottmann, Daniel O Patricio, Wander R Pavanelli, Maria Lo Sarzi, Claudia N D Santos and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.2field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Renata C FleithLaboratory of Immunobiology, Department of Microbiology, Immunology and Parasitology, Universidade Federal de Santa Catarina, Florianópolis, Brazil.
Francisco P LoboDepartment of General Biology, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil.
Paula F Dos SantosLaboratory of Immunobiology, Department of Microbiology, Immunology and Parasitology, Universidade Federal de Santa Catarina, Florianópolis, Brazil.
Mariana M RochaLaboratory of Immunobiology, Department of Microbiology, Immunology and Parasitology, Universidade Federal de Santa Catarina, Florianópolis, Brazil.
Juliano BordignonLaboratory of Molecular Virology, Instituto Carlos Chagas, Curitiba, Brazil.
Daisy M StrottmannLaboratory of Molecular Virology, Instituto Carlos Chagas, Curitiba, Brazil.
Daniel O PatricioLaboratory of Immunobiology, Department of Microbiology, Immunology and Parasitology, Universidade Federal de Santa Catarina, Florianópolis, Brazil.
Wander R PavanelliDepartment of Pathology, Universidade Estadual de Londrina, Brazil.
Maria Lo SarziSecretary for Health, Cambé, Brazil.
Claudia N D SantosLaboratory of Molecular Virology, Instituto Carlos Chagas, Curitiba, Brazil.
Brian J FergusonDepartment of Pathology, University of Cambridge, Cambridge, UK.
Daniel S MansurLaboratory of Immunobiology, Department of Microbiology, Immunology and Parasitology, Universidade Federal de Santa Catarina, Florianópolis, Brazil.
Universidade Federal de Santa Catarina · BRFundação Carlos Chagas · BRUniversidade Estadual de Londrina · BRUniversidade Federal de Minas Gerais · BRUniversity of Cambridge · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

Targeting regions of proteins that show a high degree of structural conservation has been proposed as a method of developing immunotherapies and vaccines that may bypass the wide genetic variability of RNA viruses. Despite several attempts, a vaccine that protects evenly against the four circulating Dengue virus (DV) serotypes remains elusive. To find critical conserved amino acids in dengue viruses, 120 complete genomes of each serotype were selected at random and used to calculate conservation scores for nucleotide and amino acid sequences. The identified peptide sequences were analysed for their structural conservation and localisation using crystallographic data. The longest, surface exposed, highly conserved peptide of Envelope protein was found to correspond to amino acid residues 250 to 270. Mutation of this peptide in DV1 was lethal, since no replication of the mutant virus was detected in human cells. Antibodies against this peptide were detected in DV naturally infected patients indicating its potential antigenicity. Hence, this study has identified a highly conserved, critical peptide in DV that is a target of antibodies in infected humans.

Indexed as

Amino Acid SequenceAntibodies, ViralBase SequenceConserved SequenceCrystallography, X-RayDengueDengue VirusGenome, ViralHumansModels, MolecularMutationPeptidesProtein ConformationSerogroupViral Envelope ProteinsAntibodies, ViralPeptidesViral Envelope Proteins

Identifiers

PMID27805018
PMCPMC5090869
OpenAlexW2547806033

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.