Evidence map›Paper›PMID 27804976›Full record

ArticleNature communications2016

Tetrapod limb and sarcopterygian fin regeneration share a core genetic programme.

Acacio F Nogueira, Carinne M Costa, Jamily Lorena, Rodrigo N Moreira, Gabriela N Frota-Lima, Carolina Furtado, Mark Robinson, Chris T Amemiya, Sylvain Darnet, Igor Schneider

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
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  7. Suppressors of cGAS-STING are downregulated during fin-limb regeneration and aging in aquatic vertebrates.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2024
    Article
  8. Article
  9. The salamander blastema within the broader context of metazoan regeneration.Frontiers in cell and developmental biology · 2023
    Review
  10. Rebuilding limbs, one cell at a time.Developmental dynamics : an official publication of the American Association of Anatomists · 2022
    Article
  11. Review
  12. Frontiers in cell and developmental biology · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Deep evolutionary origin of limb and fin regeneration.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Acacio F NogueiraInstituto de Ciências Biológicas, Universidade Federal do Pará, Rua Augusto Correa, 01, Belém 66075-110, Brazil.
Carinne M CostaInstituto de Ciências Biológicas, Universidade Federal do Pará, Rua Augusto Correa, 01, Belém 66075-110, Brazil.
Jamily LorenaInstituto de Ciências Biológicas, Universidade Federal do Pará, Rua Augusto Correa, 01, Belém 66075-110, Brazil.
Rodrigo N MoreiraInstituto de Ciências Biológicas, Universidade Federal do Pará, Rua Augusto Correa, 01, Belém 66075-110, Brazil.
Gabriela N Frota-LimaInstituto de Ciências Biológicas, Universidade Federal do Pará, Rua Augusto Correa, 01, Belém 66075-110, Brazil.
Carolina FurtadoUnidade Genômica, Programa de Genética, Instituto Nacional do Câncer, Rio de Janeiro 20230-240, Brazil.
Mark RobinsonBenaroya Research Institute at Virginia Mason, 1201 Ninth Avenue, Seattle, Washington 98101, USA.ORCID 0000-0002-4153-1313
Chris T AmemiyaBenaroya Research Institute at Virginia Mason, 1201 Ninth Avenue, Seattle, Washington 98101, USA.
Sylvain DarnetInstituto de Ciências Biológicas, Universidade Federal do Pará, Rua Augusto Correa, 01, Belém 66075-110, Brazil.ORCID 0000-0001-6351-0903
Igor SchneiderInstituto de Ciências Biológicas, Universidade Federal do Pará, Rua Augusto Correa, 01, Belém 66075-110, Brazil.
Universidade Federal do Pará · BRVirginia Mason Medical Center · USInstituto Nacional de Câncer - INCA · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Salamanders are the only living tetrapods capable of fully regenerating limbs. The discovery of salamander lineage-specific genes (LSGs) expressed during limb regeneration suggests that this capacity is a salamander novelty. Conversely, recent paleontological evidence supports a deeper evolutionary origin, before the occurrence of salamanders in the fossil record. Here we show that lungfishes, the sister group of tetrapods, regenerate their fins through morphological steps equivalent to those seen in salamanders. Lungfish de novo transcriptome assembly and differential gene expression analysis reveal notable parallels between lungfish and salamander appendage regeneration, including strong downregulation of muscle proteins and upregulation of oncogenes, developmental genes and lungfish LSGs. MARCKS-like protein (MLP), recently discovered as a regeneration-initiating molecule in salamander, is likewise upregulated during early stages of lungfish fin regeneration. Taken together, our results lend strong support for the hypothesis that tetrapods inherited a bona fide limb regeneration programme concomitant with the fin-to-limb transition.

Indexed as

Amino Acid SequenceAnimal FinsAnimalsExtremitiesFishesFish ProteinsGene Expression Regulation, DevelopmentalPhylogenyRegenerationUp-RegulationFish Proteins

Identifiers

PMID27804976
PMCPMC5097137
OpenAlexW2546660823

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.