Evidence map›Paper›PMID 27802572›Full record

ArticleProteins2017

Crystal structure of the archaeosine synthase QueF-like-Insights into amidino transfer and tRNA recognition by the tunnel fold.

Xianghan Mei, Jonathan Alvarez, Adriana Bon Ramos, Uttamkumar Samanta, Dirk Iwata-Reuyl, Manal A Swairjo

Abstract read
In one paragraph

Article in Proteins, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Biosynthesis and function of 7-deazaguanine derivatives in bacteria and phages.Microbiology and molecular biology reviews : MMBR · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Xianghan MeiDepartment of Chemistry and Biochemistry, San Diego State University- 5500 Campanile Drive, San Diego, California, 92182.
Jonathan AlvarezGraduate College of Biomedical Sciences, Western University of Health Sciences, Pomona, California, 91766-1854.
Adriana Bon RamosDepartment of Chemistry, Portland State University, Portland, Oregon, 97207.
Uttamkumar SamantaGraduate College of Biomedical Sciences, Western University of Health Sciences, Pomona, California, 91766-1854.
Dirk Iwata-ReuylDepartment of Chemistry, Portland State University, Portland, Oregon, 97207.
Manal A SwairjoDepartment of Chemistry and Biochemistry, San Diego State University- 5500 Campanile Drive, San Diego, California, 92182.

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
RNA modification: Structure and MechanismR01GM110588 · NIGMS · WESTERN UNIVERSITY OF HEALTH SCIENCES · PI SWAIRJO, MANAL A · 2014 to 2024
$3.9M
NIGMS NIH HHS P41 GM103393NIGMS NIH HHS R01 GM110588
6 · The paper itself

Abstract

The tunneling-fold (T-fold) structural superfamily has emerged as a versatile protein scaffold of diverse catalytic activities. This is especially evident in the pathways to the 7-deazaguanosine modified nucleosides of tRNA queuosine and archaeosine. Four members of the T-fold superfamily have been confirmed in these pathways and here we report the crystal structure of a fifth enzyme; the recently discovered amidinotransferase QueF-Like (QueF-L), responsible for the final step in the biosynthesis of archaeosine in the D-loop of tRNA in a subset of Crenarchaeota. QueF-L catalyzes the conversion of the nitrile group of the 7-cyano-7-deazaguanine (preQ

Indexed as

RNA Processing, Post-TranscriptionalAmidinotransferasesAmino Acid SequenceArchaeal ProteinsCatalytic DomainCloning, MolecularCrystallography, X-RayEscherichia coliGene ExpressionGuanosineMolecular Docking SimulationProtein BindingProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandProtein Interaction Domains and MotifsProtein Multimerization2-amino-5-cyanopyrrolo(2,3-d)pyrimidin-4-oneAmidinotransferasesArchaeal ProteinsarchaeosineGuanosineProtein SubunitsPyrimidinonesPyrrolesRecombinant ProteinsRNA, ArchaealRNA, Transfer7-cyano-7-deazaguanine7-deazaguanosineamidinotransferasemodified nucleosidepreQ0QueF-LT-foldthioimidetransfer-RNAtunneling-fold enzyme

Identifiers

PMID27802572
PMCPMC5167649

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.