Evidence map›Paper›PMID 27802269›Full record

ArticlePloS one2016

Genome-Wide Association of Stem Water Soluble Carbohydrates in Bread Wheat.

Yan Dong, Jindong Liu, Yan Zhang, Hongwei Geng, Awais Rasheed, Yonggui Xiao, Shuanghe Cao, Luping Fu, Jun Yan, Weie Wen and 4 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
12.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 40 citations in OpenAlex.

  1. Pooled it
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  14. Genome-wide association analysis of stem water-soluble carbohydrate content in bread wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Article
  15. Article
  16. QTL mapping for grain yield-related traits in bread wheat via SNP-based selective genotyping.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Article
  17. Mapping QTLs of flag leaf morphological and physiological traits related to aluminum tolerance in wheat (Physiology and molecular biology of plants : an international journal of functional plant biology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Yan DongInstitute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China.
Jindong LiuInstitute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China.
Yan ZhangInstitute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China.
Hongwei GengCollege of Agronomy, Xinjiang Agricultural University, 311 Nongda East Road, Urumqi, Xinjiang, 830052, China.
Awais RasheedInstitute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China.
Yonggui XiaoInstitute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China.
Shuanghe CaoInstitute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China.
Luping FuInstitute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China.
Jun YanCotton Research Institute, Chinese Academy of Agricultural Sciences, Anyang, Henan, China.
Weie WenInstitute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China.
Yong ZhangInstitute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China.
Ruilian JingInstitute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China.
Xianchun XiaInstitute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China.
Zhonghu HeInstitute of Crop Science/National Wheat Improvement Center, Chinese Academy of Agricultural Sciences, Beijing, China.
Chinese Academy of Agricultural Sciences · CNInstitute of Crop Sciences · CNXinjiang Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Water soluble carbohydrates (WSC) in stems play an important role in buffering grain yield in wheat against biotic and abiotic stresses; however, knowledge of genes controlling WSC is very limited. We conducted a genome-wide association study (GWAS) using a high-density 90K SNP array to better understand the genetic basis underlying WSC, and to explore marker-based breeding approaches. WSC was evaluated in an association panel comprising 166 Chinese bread wheat cultivars planted in four environments. Fifty two marker-trait associations (MTAs) distributed across 23 loci were identified for phenotypic best linear unbiased estimates (BLUEs), and 11 MTAs were identified in two or more environments. Liner regression showed a clear dependence of WSC BLUE scores on numbers of favorable (increasing WSC content) and unfavorable alleles (decreasing WSC), indicating that genotypes with higher numbers of favorable or lower numbers of unfavorable alleles had higher WSC content. In silico analysis of flanking sequences of trait-associated SNPs revealed eight candidate genes related to WSC content grouped into two categories based on the type of encoding proteins, namely, defense response proteins and proteins triggered by environmental stresses. The identified SNPs and candidate genes related to WSC provide opportunities for breeding higher WSC wheat cultivars.

Indexed as

AllelesBreadBreedingCarbohydratesEdible GrainGene Expression Regulation, PlantGenome-Wide Association StudyGenotypePhenotypePlant StemsPolymorphism, Single NucleotideStress, PhysiologicalTriticumWaterCarbohydratesWater

Identifiers

PMID27802269
PMCPMC5089554
OpenAlexW2546864466

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.