Evidence map›Paper›PMID 27801632›Full record

ArticleRNA biology2017

The mRNA transportome of the BicD/Egl transport machinery.

Paula Vazquez-Pianzola, Bogdan Schaller, Martino Colombo, Dirk Beuchle, Samuel Neuenschwander, Anne Marcil, Rémy Bruggmann, Beat Suter

Abstract read
In one paragraph

Article in RNA biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. AnbioRxiv : the preprint server for biology · 2026
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  6. The dynamic duo of microtubule polymerase Mini spindles/XMAP215 and cytoplasmic dynein is essential for maintainingProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  7. Article
  8. bioRxiv : the preprint server for biology · 2023
    Article
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  16. Review
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  18. TheGenetics · 2019
    Article
  19. Article
  20. In-frame de novo mutation inCold Spring Harbor molecular case studies · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Paula Vazquez-Pianzolaa Institute of Cell Biology, University of Bern , Bern , Switzerland.
Bogdan Schallera Institute of Cell Biology, University of Bern , Bern , Switzerland.
Martino Colombob Interfaculty Bioinformatics Unit and Swiss Institute of Bioinformatics, University of Bern , Bern , Switzerland.
Dirk Beuchlea Institute of Cell Biology, University of Bern , Bern , Switzerland.
Samuel Neuenschwanderb Interfaculty Bioinformatics Unit and Swiss Institute of Bioinformatics, University of Bern , Bern , Switzerland.
Anne Marcile National Research Council Canada, Human Health Therapeutics Portfolio, Building Montréal - Royalmount , Montreal , Quebec , Canada.
Rémy Bruggmannb Interfaculty Bioinformatics Unit and Swiss Institute of Bioinformatics, University of Bern , Bern , Switzerland.
Beat Sutera Institute of Cell Biology, University of Bern , Bern , Switzerland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

mRNA (mRNA) transport focuses the expression of encoded proteins to specific regions within cells providing them with the means to assume specific functions and even identities. BicD and the mRNA binding protein Egl interact with the microtubule motor dynein to localize mRNAs in Drosophila. Because relatively few mRNA cargos were known, we isolated and identified Egl::GFP associated mRNAs. The top candidates were validated by qPCR, in situ hybridization and genetically by showing that their localization requires BicD. In young embryos these Egl target mRNAs are preferentially localized apically, between the plasma membrane and the blastoderm nuclei, but also in the pole plasm at the posterior pole. Egl targets expressed in the ovary were mostly enriched in the oocyte and some were apically localized in follicle cells. The identification of a large group of novel mRNAs associated with BicD/Egl points to several novel developmental and physiological functions of this dynein dependent localization machinery. The verified dataset also allowed us to develop a tool that predicts conserved A'-form-like stem loops that serve as localization elements in 3'UTRs.

Indexed as

TranscriptomeAnimalsBase SequenceBinding SitesComputational BiologyDrosophila melanogasterDrosophila ProteinsIn Situ HybridizationNucleic Acid ConformationProtein TransportRNA-Binding ProteinsRNA, MessengerRNA TransportDrosophila Proteinsegl protein, DrosophilaRNA-Binding ProteinsRNA, MessengerBicaudal-dDrosophila developmentegalitarianmicrotubule transportmRNA localization

Identifiers

PMID27801632
PMCPMC5270521

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.