Evidence map›Paper›PMID 27801293›Full record

ArticleBMC genomics2016

The polymyxin B-induced transcriptomic response of a clinical, multidrug-resistant Klebsiella pneumoniae involves multiple regulatory elements and intracellular targets.

Pablo Ivan Pereira Ramos, Márlon Grégori Flores Custódio, Guadalupe Del Rosario Quispe Saji, Thiago Cardoso, Gisele Lucchetti da Silva, Graziela Braun, Willames M B S Martins, Raquel Girardello, Ana Tereza Ribeiro de Vasconcelos, Elmer Fernández and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 33 citations in OpenAlex.

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  7. The ArcAB Two-Component System: Function in Metabolism, Redox Control, and Infection.Microbiology and molecular biology reviews : MMBR · 2022
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  10. Pathway Driven Target Selection inFrontiers in cellular and infection microbiology · 2022
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  12. Review
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  15. Review
  16. Article
  17. Network-Based Metabolism-Centered Screening of Potential Drug Targets inFrontiers in cellular and infection microbiology · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Pablo Ivan Pereira RamosLaboratório Nacional de Computação Científica, Petrópolis, Rio de Janeiro, Brazil.
Márlon Grégori Flores CustódioLaboratório Nacional de Computação Científica, Petrópolis, Rio de Janeiro, Brazil.
Guadalupe Del Rosario Quispe SajiLaboratório Nacional de Computação Científica, Petrópolis, Rio de Janeiro, Brazil.
Thiago CardosoLaboratório Nacional de Computação Científica, Petrópolis, Rio de Janeiro, Brazil.
Gisele Lucchetti da SilvaLaboratório Nacional de Computação Científica, Petrópolis, Rio de Janeiro, Brazil.
Graziela BraunLaboratório Alerta. Division of Infectious Diseases, Department of Internal Medicine, Escola Paulista de Medicina/Universidade Federal de São Paulo, São Paulo, São Paulo, Brazil.
Willames M B S MartinsLaboratório Alerta. Division of Infectious Diseases, Department of Internal Medicine, Escola Paulista de Medicina/Universidade Federal de São Paulo, São Paulo, São Paulo, Brazil.
Raquel GirardelloLaboratório Alerta. Division of Infectious Diseases, Department of Internal Medicine, Escola Paulista de Medicina/Universidade Federal de São Paulo, São Paulo, São Paulo, Brazil.
Ana Tereza Ribeiro de VasconcelosLaboratório Nacional de Computação Científica, Petrópolis, Rio de Janeiro, Brazil.
Elmer FernándezFacultad de Ingeniería, Universidad Católica de Córdoba, CONICET, Córdoba, Argentina.
Ana Cristina GalesLaboratório Alerta. Division of Infectious Diseases, Department of Internal Medicine, Escola Paulista de Medicina/Universidade Federal de São Paulo, São Paulo, São Paulo, Brazil. ana.gales@gmail.com.
Marisa Fabiana NicolásLaboratório Nacional de Computação Científica, Petrópolis, Rio de Janeiro, Brazil. marisa@lncc.br.
Laboratório Nacional de Computação Científica · BRUniversidade Federal de São Paulo · BRConsejo Nacional de Investigaciones Científicas y Técnicas · AR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe emergence of multidrug-resistant Klebsiella pneumoniae is a major public health concern. Many K. pneumoniae infections can only be treated when resorting to last-line drugs such as polymyxin B (PB). However, resistance to this antibiotic is also observed, although insufficient information is described on its mode of action as well as the mechanisms used by resistant bacteria to evade its effects. We aimed to study PB resistance and the influence of abiotic stresses in a clinical K. pneumoniae strain using whole transcriptome profiling.

resultsWe sequenced 12 cDNA libraries of K. pneumoniae Kp13 bacteria, from two biological replicates of the original strain Kp13 (Kp13) and five derivative strains: induced high-level PB resistance in acidic pH (Kp13

conclusionsWe obtained whole transcriptome data for K. pneumoniae under different environmental conditions and PB treatment. Our results supports the notion that the K. pneumoniae response to PB exposure goes beyond damaged membrane reconstruction and involves recruitment of multiple gene modules and intracellular targets.

Indexed as

Drug Resistance, Multiple, BacterialRegulatory Sequences, Nucleic AcidTranscriptomeAnti-Bacterial AgentsCell RespirationGene Expression Regulation, BacterialHigh-Throughput Nucleotide SequencingHumansHydroxyl RadicalKlebsiella InfectionsKlebsiella pneumoniaeModels, BiologicalPolymyxin BReproducibility of ResultsAnti-Bacterial AgentsHydroxyl RadicalPolymyxin BAntibiotic resistanceKlebsiella pneumoniaePathogenPolymyxin BRNA-seqTranscriptomics

Identifiers

PMID27801293
PMCPMC5088521
OpenAlexW2537489122

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.