Evidence map›Paper›PMID 27799623›Full record

ArticleThe Journal of experimental medicine2016

Interferon lambda 4 expression is suppressed by the host during viral infection.

MeeAe Hong, Johannes Schwerk, Chrissie Lim, Alison Kell, Abigail Jarret, Joseph Pangallo, Yueh-Ming Loo, Shuanghu Liu, Curt H Hagedorn, Michael Gale and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 1 pooled it
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 1 synthesis or guideline pooled it, 63 citations in OpenAlex.

  1. Pooled it
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  6. Review
  7. Article
  8. Interferon lambda 4 is a gut antimicrobial protein.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. A Novel Inactive Isoform with a Restored Reading Frame Is Expressed from the Human Interferon Lambda 4 TT Allele at rs368234815.Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research · 2023
    Article
  10. Autoantibodies Neutralizing Type III Interferons Are Uncommon in Patients with Severe Coronavirus Disease 2019 Pneumonia.Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

MeeAe HongDepartment of Immunology, University of Washington, Seattle, WA 98109.
Johannes SchwerkDepartment of Immunology, University of Washington, Seattle, WA 98109.ORCID 0000-0002-5964-7162
Chrissie LimDepartment of Immunology, University of Washington, Seattle, WA 98109.ORCID 0000-0002-1011-5720
Alison KellDepartment of Immunology, University of Washington, Seattle, WA 98109.ORCID 0000-0001-5550-1038
Abigail JarretDepartment of Immunology, University of Washington, Seattle, WA 98109.ORCID 0000-0002-8864-9829
Joseph PangalloDepartment of Immunology, University of Washington, Seattle, WA 98109.ORCID 0000-0002-6046-614X
Yueh-Ming LooDepartment of Immunology, University of Washington, Seattle, WA 98109.ORCID 0000-0001-6294-7273
Shuanghu LiuDepartment of Medicinal Chemistry, College of Pharmacy, University of Utah, Salt Lake City, UT 84112.ORCID 0000-0001-5422-9466
Curt H HagedornDepartment of Medicine, University of Arkansas for Medical Sciences and the Central Arkansas Veterans Healthcare System, Little Rock, AR 72205.
Michael GaleDepartment of Immunology, University of Washington, Seattle, WA 98109.
Ram SavanDepartment of Immunology, University of Washington, Seattle, WA 98109 savanram@uw.edu.ORCID 0000-0002-3087-1355
University of Washington · USCentral Arkansas Veterans Healthcare System · USUniversity of Utah · US

Funding

Virus-Host Interactions in Hepatitis C Virus (HCV) InfectionsU19AI040035 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI RAY, STUART C · 1996 to 2009
$12.0M
Innate Immune Control of West Nile VirusR01AI104002 · NIAID · UNIVERSITY OF WASHINGTON · PI DIAMOND, MICHAEL S, GALE, MICHAEL · 2013 to 2017
$3.7M
The Host Response to Hepatitis C VirusR01AI060389 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI GALE, MICHAEL · 2003 to 2012
$3.4M
The Host Response to Hepatitis C VirusR01AI118916 · NIAID · UNIVERSITY OF WASHINGTON · PI GALE, MICHAEL · 2016 to 2020
$2.5M
Novel regulatory mechanisms control IFNL3 expression during HCV infectionR01AI108765 · NIAID · UNIVERSITY OF WASHINGTON · PI SAVAN, RAM · 2014 to 2018
$2.3M
The Host Response to Hepatitis C VirusR56AI060389 · NIAID · UNIVERSITY OF WASHINGTON · PI GALE, MICHAEL · 2014 to 2014
$494k
Molecular Phenotype of Polyps in Serrated Polyposis SyndromeR21CA176130 · NCI · UNIV OF ARKANSAS FOR MED SCIS · PI HAGEDORN, CURT H. · 2013 to 2014
$350k
NCI NIH HHS R21 CA176130NIAID NIH HHS N01 AI040035NIAID NIH HHS R01 AI060389NIAID NIH HHS R01 AI104002NIAID NIH HHS R01 AI108765NIAID NIH HHS R01 AI118916NIAID NIH HHS R56 AI060389
6 · The paper itself

Abstract

Interferon (IFN) lambdas are critical antiviral effectors in hepatic and mucosal infections. Although IFNλ1, IFNλ2, and IFNλ3 act antiviral, genetic association studies have shown that expression of the recently discovered IFNL4 is detrimental to hepatitis C virus (HCV) infection through a yet unknown mechanism. Intriguingly, human IFNL4 harbors a genetic variant that introduces a premature stop codon. We performed a molecular and biochemical characterization of IFNλ4 to determine its role and regulation of expression. We found that IFNλ4 exhibits similar antiviral activity to IFNλ3 without negatively affecting antiviral IFN activity or cell survival. We show that humans deploy several mechanisms to limit expression of functional IFNλ4 through noncoding splice variants and nonfunctional protein isoforms. Furthermore, protein-coding IFNL4 mRNA are not loaded onto polyribosomes and lack a strong polyadenylation signal, resulting in poor translation efficiency. This study provides mechanistic evidence that humans suppress IFNλ4 expression, suggesting that immune function is dependent on other IFNL family members.

Indexed as

Host-Pathogen InteractionsAlternative SplicingAnimalsAntiviral AgentsBase SequenceCell DeathCell Line, TumorExtracellular SpaceFrameshift MutationHepacivirusHumansInterferon LambdaInterferonsInterleukinsIntracellular SpaceModels, BiologicalAntiviral AgentsIFNL4 protein, humanIFNLR1 protein, humanInterferon Lambdainterferon-lambda, humanInterferonsInterleukinsPathogen-Associated Molecular Pattern MoleculesProtein IsoformsReceptors, CytokineReceptors, InterferonRecombinant Proteins

Identifiers

PMID27799623
PMCPMC5110018
OpenAlexW2542068953

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.