Evidence map›Paper›PMID 27799520›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Drosophila IRBP bZIP heterodimer binds P-element DNA and affects hybrid dysgenesis.

Malik Joseph Francis, Siobhan Roche, Michael Jeffrey Cho, Eileen Beall, Bosun Min, Ronaldo Paolo Panganiban, Donald C Rio

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
7.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 40 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Malik Joseph FrancisDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720.
Siobhan RocheDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720.
Michael Jeffrey ChoDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720.ORCID 0000-0002-4628-303X
Eileen BeallDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720.
Bosun MinDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720.
Ronaldo Paolo PanganibanDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720.
Donald C RioDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720; don_rio@berkeley.edu.
University of California, Berkeley · USQB3 · US

Funding

DNA transposons and alternative pre-mRNA splicing.R35GM118121 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RIO, DONALD C · 2016 to 2025
$6.7M
BIOCHEMISTRY OF REGULATED PRE-MRNA SPLICING/DROSOPHILAR01GM061987 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RIO, DONALD C · 2000 to 2010
$3.0M
Human THAP9-an active DNA transposaseR01GM104385 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RIO, DONALD C · 2013 to 2016
$1.4M
MECHANISMS &REGULATION OF DROSOPHILA P ELMNT TRANSPSTNR01GM048862 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RIO, DONALD C · 1992 to 2003
$1.4M
Methods for purification of individual nuclear pre-messenger RNA-protein complexeR01GM094890 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RIO, DONALD C · 2010 to 2013
$1.2M
LTQ XL Linear Quadrupole Ion Trap Mass SpectrometerS10RR025622 · NCRR · UNIVERSITY OF CALIFORNIA BERKELEY · PI KOHLSTAEDT, LORI · 2009 to 2009
$463k
NCRR NIH HHS S10 RR025622NIGMS NIH HHS R01 GM048862NIGMS NIH HHS R01 GM061987NIGMS NIH HHS R01 GM094890NIGMS NIH HHS R01 GM104385NIGMS NIH HHS R35 GM118121
6 · The paper itself

Abstract

In Drosophila, P-element transposition causes mutagenesis and genome instability during hybrid dysgenesis. The P-element 31-bp terminal inverted repeats (TIRs) contain sequences essential for transposase cleavage and have been implicated in DNA repair via protein-DNA interactions with cellular proteins. The identity and function of these cellular proteins were unknown. Biochemical characterization of proteins that bind the TIRs identified a heterodimeric basic leucine zipper (bZIP) complex between an uncharacterized protein that we termed "Inverted Repeat Binding Protein (IRBP) 18" and its partner Xrp1. The reconstituted IRBP18/Xrp1 heterodimer binds sequence-specifically to its dsDNA-binding site within the P-element TIRs. Genetic analyses implicate both proteins as critical for repair of DNA breaks following transposase cleavage in vivo. These results identify a cellular protein complex that binds an active mobile element and plays a more general role in maintaining genome stability.

Indexed as

DNA Transposable ElementsAnimalsDNADNA-Binding ProteinsDNA DamageDNA RepairDrosophilaDrosophila ProteinsMutationNuclear ProteinsProtein MultimerizationDNADNA-Binding ProteinsDNA Transposable ElementsDrosophila ProteinsIrbp protein, DrosophilaNuclear ProteinsXrp1 protein, DrosophilaDNA repairIRBP18/CG6272IRBP complexP-transposable elementsXrp1/CG17836

Identifiers

PMID27799520
PMCPMC5135294
OpenAlexW2541341065

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.