Evidence map›Paper›PMID 27798638›Full record

ArticlePLoS genetics2016

53BP1 Protects against CtIP-Dependent Capture of Ectopic Chromosomal Sequences at the Junction of Distant Double-Strand Breaks.

Josée Guirouilh-Barbat, Camille Gelot, Anyong Xie, Elodie Dardillac, Ralph Scully, Bernard S Lopez

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Josée Guirouilh-BarbatCNRS UMR 8200, Institut de Cancérologie Gustave Roussy, Université Paris Sud, Equipe labélisée "LIGUE 2014", Rue Edouard Vaillant.
Camille GelotCNRS UMR 8200, Institut de Cancérologie Gustave Roussy, Université Paris Sud, Equipe labélisée "LIGUE 2014", Rue Edouard Vaillant.ORCID http://orcid.org/0000-0001-5857-8962
Anyong XieDepartment of Medicine, Harvard Medical School, Beth Israel Deaconess Medical Center, Boston.
Elodie DardillacCNRS UMR 8200, Institut de Cancérologie Gustave Roussy, Université Paris Sud, Equipe labélisée "LIGUE 2014", Rue Edouard Vaillant.
Ralph ScullyDepartment of Medicine, Harvard Medical School, Beth Israel Deaconess Medical Center, Boston.ORCID http://orcid.org/0000-0002-5064-0175
Bernard S LopezCNRS UMR 8200, Institut de Cancérologie Gustave Roussy, Université Paris Sud, Equipe labélisée "LIGUE 2014", Rue Edouard Vaillant.
Université Paris-Sud · FRBeth Israel Deaconess Medical Center · US

Funding

ANALYSIS OF BRCA1 RECOMBINATION FUNCTIONSR01CA095175 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI SCULLY, RALPH · 2002 to 2021
$4.9M
NCI NIH HHS R01 CA095175
6 · The paper itself

Abstract

DNA double-strand breaks (DSB) are very harmful lesions that can generate genome rearrangements. In this study, we used intrachromosomal reporters to compare both the efficiency and accuracy of end-joining occurring with close (34 bp apart) vs. distant DSBs (3200 bp apart) in human fibroblasts. We showed that a few kb between two intrachromosomal I-SceI-induced DSBs are sufficient to foster deletions and capture/insertions at the junction scar. Captured sequences are mostly coupled to deletions and can be partial duplications of the reporter (i.e., sequences adjacent to the DSB) or insertions of ectopic chromosomal sequences (ECS). Interestingly, silencing 53BP1 stimulates capture/insertions with distant but not with close double-strand ends (DSEs), although deletions were stimulated in both case. This shows that 53BP1 protects both close and distant DSEs from degradation and that the association of unprotection with distance between DSEs favors ECS capture. Reciprocally, silencing CtIP lessens ECS capture both in control and 53BP1-depleted cells. We propose that close ends are immediately/rapidly tethered and ligated, whereas distant ends first require synapsis of the distant DSEs prior to ligation. This "spatio-temporal" gap gives time and space for CtIP to initiate DNA resection, suggesting an involvement of single-stranded DNA tails for ECS capture. We therefore speculate that the resulting single-stranded DNA copies ECS through microhomology-mediated template switching.

Indexed as

DNA Breaks, Double-StrandedRecombination, GeneticCarrier ProteinsChromosome PairingDNA End-Joining RepairDNA, Single-StrandedEndodeoxyribonucleasesFibroblastsGene SilencingGenome, HumanHumansNuclear ProteinsTumor Suppressor p53-Binding Protein 1Carrier ProteinsDNA, Single-StrandedEndodeoxyribonucleasesNuclear ProteinsRBBP8 protein, humanTP53BP1 protein, humanTumor Suppressor p53-Binding Protein 1

Identifiers

PMID27798638
PMCPMC5087911
OpenAlexW2539589489

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.