Evidence map›Paper›PMID 27798625›Full record

ArticleNature genetics2016

The genomic landscape of core-binding factor acute myeloid leukemias.

Zachary J Faber, Xiang Chen, Amanda Larson Gedman, Kristy Boggs, Jinjun Cheng, Jing Ma, Ina Radtke, Jyh-Rong Chao, Michael P Walsh, Guangchun Song and 39 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 181 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
181citing papers in PubMed, 1 pooled it
17.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

181 citing papers in PubMed, 1 synthesis or guideline pooled it, 266 citations in OpenAlex.

  1. Pooled it
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  3. Hematopoietic Stem Cell Transplantation Outcomes for High-Risk AML: A Report From the Children's Oncology Group.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2025
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121 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

49 authors at 3 institutions in 2 countries.

Zachary J FaberDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Xiang ChenDepartment of Computational Biology and Bioinformatics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Amanda Larson GedmanDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Kristy BoggsDepartment of Computational Biology and Bioinformatics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Jinjun ChengDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Jing MaDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Ina RadtkeDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Jyh-Rong ChaoDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Michael P WalshDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Guangchun SongDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Anna K AnderssonDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Jinjun DangDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Li DongDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Yu LiuDepartment of Computational Biology and Bioinformatics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Robert HuetherDepartment of Computational Biology and Bioinformatics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Zhongling CaiDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Heather MulderDepartment of Computational Biology and Bioinformatics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Gang WuDepartment of Computational Biology and Bioinformatics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.ORCID 0000-0002-1678-5864
Michael EdmonsonDepartment of Computational Biology and Bioinformatics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Michael RuschDepartment of Computational Biology and Bioinformatics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.ORCID 0000-0002-5363-1848
Chunxu QuDepartment of Computational Biology and Bioinformatics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Yongjin LiDepartment of Computational Biology and Bioinformatics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Bhavin VadodariaDepartment of Computational Biology and Bioinformatics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Jianmin WangDepartment of Computational Biology and Bioinformatics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Erin HedlundDepartment of Computational Biology and Bioinformatics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Xueyuan CaoDepartment of Biostatistics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Donald YergeauDepartment of Computational Biology and Bioinformatics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Joy NakitandweDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Stanley B PoundsDepartment of Biostatistics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.ORCID 0000-0002-9167-2114
Sheila ShurtleffDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Robert S FultonMcDonnell Genome Institute at Washington University, St. Louis, Missouri, USA.
Lucinda L FultonMcDonnell Genome Institute at Washington University, St. Louis, Missouri, USA.
John EastonDepartment of Computational Biology and Bioinformatics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Evan ParganasDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Ching-Hon PuiDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Jeffrey E RubnitzDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Li DingMcDonnell Genome Institute at Washington University, St. Louis, Missouri, USA.ORCID 0000-0003-1517-2975
Elaine R MardisMcDonnell Genome Institute at Washington University, St. Louis, Missouri, USA.
Richard K WilsonMcDonnell Genome Institute at Washington University, St. Louis, Missouri, USA.
Tanja A GruberDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Charles G MullighanDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.ORCID 0000-0002-1871-1850
Richard F SchlenkDepartment of Internal Medicine III, University of Ulm, Ulm, Germany.
Peter PaschkaDepartment of Internal Medicine III, University of Ulm, Ulm, Germany.
Konstanze DöhnerDepartment of Internal Medicine III, University of Ulm, Ulm, Germany.
Hartmut DöhnerDepartment of Internal Medicine III, University of Ulm, Ulm, Germany.
Lars BullingerDepartment of Internal Medicine III, University of Ulm, Ulm, Germany.
Jinghui ZhangDepartment of Computational Biology and Bioinformatics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Jeffery M KlcoDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
James R DowningDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
St. Jude Children's Research Hospital · USJames S. McDonnell Foundation · USUniversität Ulm · DE

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
NOTCH SIGNALING IN MYELOID DEVELOPMENTK08HL116605 · NHLBI · WASHINGTON UNIVERSITY · PI KLCO, JEFFERY M · 2013 to 2017
$711k
NCI NIH HHS P30 CA021765NHLBI NIH HHS K08 HL116605
6 · The paper itself

Abstract

Acute myeloid leukemia (AML) comprises a heterogeneous group of leukemias frequently defined by recurrent cytogenetic abnormalities, including rearrangements involving the core-binding factor (CBF) transcriptional complex. To better understand the genomic landscape of CBF-AMLs, we analyzed both pediatric (n = 87) and adult (n = 78) samples, including cases with RUNX1-RUNX1T1 (n = 85) or CBFB-MYH11 (n = 80) rearrangements, by whole-genome or whole-exome sequencing. In addition to known mutations in the Ras pathway, we identified recurrent stabilizing mutations in CCND2, suggesting a previously unappreciated cooperating pathway in CBF-AML. Outside of signaling alterations, RUNX1-RUNX1T1 and CBFB-MYH11 AMLs demonstrated remarkably different spectra of cooperating mutations, as RUNX1-RUNX1T1 cases harbored recurrent mutations in DHX15 and ZBTB7A, as well as an enrichment of mutations in epigenetic regulators, including ASXL2 and the cohesin complex. This detailed analysis provides insights into the pathogenesis and development of CBF-AML, while highlighting dramatic differences in the landscapes of cooperating mutations for these related AML subtypes.

Indexed as

AdultBiomarkers, TumorChildCore Binding FactorsGenomicsHumansLeukemia, Myeloid, AcuteMutationOncogene Proteins, FusionBiomarkers, TumorCore Binding FactorsOncogene Proteins, Fusion

Identifiers

PMID27798625
PMCPMC5508996
OpenAlexW2546297708

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.