Evidence map›Paper›PMID 27798305›Full record

ArticleProceedings. Biological sciences2016

Global population divergence and admixture of the brown rat (Rattus norvegicus).

Emily E Puckett, Jane Park, Matthew Combs, Michael J Blum, Juliet E Bryant, Adalgisa Caccone, Federico Costa, Eva E Deinum, Alexandra Esther, Chelsea G Himsworth and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings. Biological sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed, 2 pooled it
13.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 2 syntheses or guidelines pooled it, 148 citations in OpenAlex.

  1. Genomic investigations of successful invasions: the picture emerging from recent studies.Biological reviews of the Cambridge Philosophical Society · 2025
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3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 15 institutions in 11 countries.

Emily E PuckettLouis Calder Center, Biological Field Station, Fordham University, Armonk, NY 10504, USA emily.e.puckett@gmail.com.ORCID 0000-0002-9325-4629
Jane ParkLouis Calder Center, Biological Field Station, Fordham University, Armonk, NY 10504, USA.
Matthew CombsLouis Calder Center, Biological Field Station, Fordham University, Armonk, NY 10504, USA.
Michael J BlumXavier Center for Bioenvironmental Research, Tulane University, New Orleans, LA 70112, USA.
Juliet E BryantClinical Research Unit, Oxford University, Hanoi, Vietnam.
Adalgisa CacconeDepartment of Ecology and Evolutionary Biology, Yale University, PO Box 208106, New Haven, CT 06520-8106, USA.
Federico CostaInstituto de Saúde Coletiva, Universidade Federal da Bahia, Salvador, Brazil.
Eva E DeinumAshworth Laboratories, Institute of Evolutionary Biology, University of Edinburgh, Charlotte Auerbach Road, Edinburgh EH9 3FL, UK.
Alexandra EstherFederal Research Centre for Cultivated Plants, Institute for Plant Protection in Horticulture and Forests, Vertebrate Research, Julius Kühn Institute, Münster, Germany.
Chelsea G HimsworthAnimal Health Centre, British Columbia Ministry of Agriculture, 1767 Angus Campbell Road, Abbotsford, British Columbia, Canada V3G 2M3.
Peter D KeightleyAshworth Laboratories, Institute of Evolutionary Biology, University of Edinburgh, Charlotte Auerbach Road, Edinburgh EH9 3FL, UK.
Albert KoLaboratory of Epidemiology and Public Health, Yale University, New Haven, CT, USA.
Åke LundkvistDepartment of Medical Biochemistry and Microbiology, Zoonosis Science Center, Uppsala University, Uppsala, Sweden.
Lorraine M McElhinneyWildlife Zoonoses and Vector Borne Disease Research Group, Animal and Plant Health Agency (APHA), Woodham Lane, New Haw Surrey, UK.
Serge MorandCNRS-CIRAD, Centre d'Infectiologie Christophe Mérieux du Laos, Vientiane, Lao PDR.
Judith RobinsDepartment of Anthropology, University of Auckland, Private Bag 92019, Auckland, New Zealand.
James RussellSchool of Biological Sciences, University of Auckland, Private Bag 92019, Auckland, New Zealand.
Tanja M StrandDepartment of Medical Biochemistry and Microbiology, Zoonosis Science Center, Uppsala University, Uppsala, Sweden.
Olga SuarezLaboratorio de Ecologia de Roedores Urbanos, IEGEBA-CONICET, EGE-Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires Pabellon II, Ciudad Universitaria (C1428EHA), Buenos Aires, Argentina.
Lisa YonSchool of Veterinary Medicine and Science, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK.
Jason Munshi-SouthLouis Calder Center, Biological Field Station, Fordham University, Armonk, NY 10504, USA jmunshisouth@fordham.edu.ORCID 0000-0002-8067-4341
Fordham University · USUniversity of Auckland · NZUppsala University · SEYale University · USAnimal and Plant Health Agency · GBCentre d’Infectiologie Christophe Mérieux of Laos · LAConsejo Nacional de Investigaciones Científicas y Técnicas · ARGovernment of British Columbia · CAJulius Kühn-Institut · DEOxford University Clinical Research Unit · VNTulane University · USUniversidade Federal da Bahia · BRUniversity of Edinburgh · GBUniversity of Nottingham · GBWageningen University & Research · NL

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Naturally-Acquired and Vaccine-Mediated Immunity to LeptospirosisR01AI121207 · NIAID · YALE UNIVERSITY · PI KO, ALBERT ICKSANG, REIS, MITERMAYER GALVAO DOS · 2016 to 2020
$6.4M
Disease Determinants of Urban LeptospirosisU01AI088752 · NIAID · YALE UNIVERSITY · PI KO, ALBERT ICKSANG · 2010 to 2014
$3.6M
Ecoepidemiology of leptospirosis in the urban slums of BrazilR01TW009504 · FIC · YALE UNIVERSITY · PI BEGON, MICHAEL, CHILDS, JAMES EMORY · 2012 to 2016
$2.2M
FIC NIH HHS R01 TW009504NCATS NIH HHS UL1 TR001863NIAID NIH HHS R01 AI121207NIAID NIH HHS U01 AI088752
6 · The paper itself

Abstract

Native to China and Mongolia, the brown rat (Rattus norvegicus) now enjoys a worldwide distribution. While black rats and the house mouse tracked the regional development of human agricultural settlements, brown rats did not appear in Europe until the 1500s, suggesting their range expansion was a response to relatively recent increases in global trade. We inferred the global phylogeography of brown rats using 32 k SNPs, and detected 13 evolutionary clusters within five expansion routes. One cluster arose following a southward expansion into Southeast Asia. Three additional clusters arose from two independent eastward expansions: one expansion from Russia to the Aleutian Archipelago, and a second to western North America. Westward expansion resulted in the colonization of Europe from which subsequent rapid colonization of Africa, the Americas and Australasia occurred, and multiple evolutionary clusters were detected. An astonishing degree of fine-grained clustering between and within sampling sites underscored the extent to which urban heterogeneity shaped genetic structure of commensal rodents. Surprisingly, few individuals were recent migrants, suggesting that recruitment into established populations is limited. Understanding the global population structure of R. norvegicus offers novel perspectives on the forces driving the spread of zoonotic disease, and aids in development of rat eradication programmes.

Indexed as

Evolution, MolecularGenetics, PopulationAfricaAnimalsAustralasiaChinaEuropeHumansMongoliaNorth AmericaPolymorphism, Single NucleotideRatsRussiacityscapescommensalinvasive speciesphylogeographypopulation genomicsRAD-Seq

Identifiers

PMID27798305
PMCPMC5095384
OpenAlexW2535923986

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.