Evidence map›Paper›PMID 27797851›Full record

ArticleEMBO reports2016

Identification of novel genes and networks governing hematopoietic stem cell development.

Tianxu Han, Chao-Shun Yang, Kung-Yen Chang, Danhua Zhang, Farhad B Imam, Tariq M Rana

Open access · greenAbstract read
In one paragraph

Article in EMBO reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. METTLing in Stem Cell and Cancer Biology.Stem cell reviews and reports · 2023
    Review
  4. Structural and Functional Insights into GID/CTLH E3 Ligase Complexes.International journal of molecular sciences · 2022
    Review
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Tianxu HanDepartment of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA, USA.
Chao-Shun YangDepartment of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA, USA.
Kung-Yen ChangDepartment of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA, USA.
Danhua ZhangDepartment of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA, USA.
Farhad B ImamDepartment of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA, USA.
Tariq M RanaDepartment of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA, USA trana@ucsd.edu.ORCID 0000-0001-9558-5766
University of California San Diego · US

Funding

Mechanisms of innate immunity against HIVR01AI043198 · NIAID · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI RANA, TARIQ M · 1998 to 2014
$4.7M
STRUCTURE/FUNCTION OF HIV TAT-TAR COMPLEXR01AI041404 · NIAID · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI RANA, TARIQ M · 1997 to 2013
$4.3M
Modeling HIV/AIDS Associated Neurological Disorders with Human Pluripotent CellsDP1DA039562 · NIDA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI RANA, TARIQ M · 2015 to 2020
$3.9M
Structure and Function of Ribonucleoprotein Complexes Modulating HIV ReplicationR56AI041404 · NIAID · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI RANA, TARIQ M · 2008 to 2009
$952k
NIAID NIH HHS R01 AI041404NIAID NIH HHS R01 AI043198NIAID NIH HHS R56 AI041404NIDA NIH HHS DP1 DA039562
6 · The paper itself

Abstract

Hematopoietic stem cells (HSCs) are capable of giving rise to all blood cell lineages throughout adulthood, and the generation of engraftable HSCs from human pluripotent stem cells is a major goal for regenerative medicine. Here, we describe a functional genome-wide RNAi screen to identify genes required for the differentiation of embryonic stem cell (ESC) into hematopoietic stem/progenitor cells (HSPCs) in vitro We report the discovery of novel genes important for the endothelial-to-hematopoietic transition and subsequently for HSPC specification. High-throughput sequencing and bioinformatic analyses identified twelve groups of genes, including a set of 351 novel genes required for HSPC specification. As in vivo proof of concept, four of these genes, Ap2a1, Mettl22, Lrsam1, and Hal, are selected for validation, confirmed to be essential for HSPC development in zebrafish and for maintenance of human HSCs. Taken together, our results not only identify a number of novel regulatory genes and pathways essential for HSPC development but also serve as valuable resource for directed differentiation of therapy grade HSPCs using human pluripotent stem cells.

Indexed as

HematopoiesisAnimalsCell LineageCells, CulturedComputational BiologyEmbryonic Stem CellsFetal BloodHematopoietic Stem CellsHigh-Throughput Nucleotide SequencingHumansMetabolic Networks and PathwaysMiceRNA InterferenceSignal TransductionZebrafishdirected differentiationembryonic stem cellshematopoietic stem cellsRNAi

Identifiers

PMID27797851
PMCPMC5167341
OpenAlexW2543166111

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.