Evidence map›Paper›PMID 27797353›Full record

ArticleNature plants2016

The Cardamine hirsuta genome offers insight into the evolution of morphological diversity.

Xiangchao Gan, Angela Hay, Michiel Kwantes, Georg Haberer, Asis Hallab, Raffaele Dello Ioio, Hugo Hofhuis, Bjorn Pieper, Maria Cartolano, Ulla Neumann and 21 more

Erratum issuedAbstract read
In one paragraph

Article in Nature plants, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed.

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  11. Herbarium specimens reveal links betweenbioRxiv : the preprint server for biology · 2024
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  14. Polyploid genome assembly ofGigaByte (Hong Kong, China) · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

31 authors.

Xiangchao GanMax Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, 50829 Köln, Germany.
Angela HayMax Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, 50829 Köln, Germany.
Michiel KwantesMax Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, 50829 Köln, Germany.
Georg HabererPlant Genome and Systems Biology, Helmholtz Zentrum Munich, Ingolstädter Landstrasse 1, 85764 Neuherberg, Germany.
Asis HallabMax Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, 50829 Köln, Germany.
Raffaele Dello IoioMax Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, 50829 Köln, Germany.
Hugo HofhuisMax Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, 50829 Köln, Germany.
Bjorn PieperMax Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, 50829 Köln, Germany.
Maria CartolanoMax Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, 50829 Köln, Germany.
Ulla NeumannMax Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, 50829 Köln, Germany.
Lachezar A NikolovMax Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, 50829 Köln, Germany.
Baoxing SongMax Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, 50829 Köln, Germany.
Mohsen HajheidariMax Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, 50829 Köln, Germany.
Roman BriskineDepartment of Evolutionary Biology and Environmental Studies, University of Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland.ORCID 0000-0002-6831-3914
Evangelia KougioumoutziDepartment of Plant Sciences, University of Oxford, South Parks Road, Oxford OX1 3RB, UK.
Daniela VladDepartment of Plant Sciences, University of Oxford, South Parks Road, Oxford OX1 3RB, UK.
Suvi BroholmDepartment of Plant Sciences, University of Oxford, South Parks Road, Oxford OX1 3RB, UK.
Jotun HeinDepartment of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK.
Khalid MeksemDepartment of Plant, Soil and Agricultural Systems, Southern Illinois University, Carbondale, Illinois 62901, USA.
David LightfootDepartment of Plant, Soil and Agricultural Systems, Southern Illinois University, Carbondale, Illinois 62901, USA.ORCID 0000-0002-5725-4381
Kentaro K ShimizuDepartment of Evolutionary Biology and Environmental Studies, University of Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland.
Rie Shimizu-InatsugiDepartment of Evolutionary Biology and Environmental Studies, University of Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland.
Martha ImprialouDepartment of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK.
David KudrnaArizona Genomics Institute, School of Plant Sciences and BIO5 Institute for Collaborative Research, University of Arizona, 1657 East Helen Street, Tucson, Arizona 85721, USA.
Rod WingArizona Genomics Institute, School of Plant Sciences and BIO5 Institute for Collaborative Research, University of Arizona, 1657 East Helen Street, Tucson, Arizona 85721, USA.
Shusei SatoDepartment of Plant Sciences, University of Oxford, South Parks Road, Oxford OX1 3RB, UK.
Peter HuijserMax Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, 50829 Köln, Germany.
Dmitry FilatovDepartment of Plant Sciences, University of Oxford, South Parks Road, Oxford OX1 3RB, UK.
Klaus F X MayerPlant Genome and Systems Biology, Helmholtz Zentrum Munich, Ingolstädter Landstrasse 1, 85764 Neuherberg, Germany.
Richard MottUCL Genetics Institute, University College London, Gower Street, London WC1E 6BT, UK.ORCID 0000-0002-1022-9330
Miltos TsiantisMax Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, 50829 Köln, Germany.

Funding

Biotechnology and Biological Sciences Research Council BB/H011455/1Biotechnology and Biological Sciences Research Council BB/H01313X/1Wellcome Trust
6 · The paper itself

Abstract

Finding causal relationships between genotypic and phenotypic variation is a key focus of evolutionary biology, human genetics and plant breeding. To identify genome-wide patterns underlying trait diversity, we assembled a high-quality reference genome of Cardamine hirsuta, a close relative of the model plant Arabidopsis thaliana. We combined comparative genome and transcriptome analyses with the experimental tools available in C. hirsuta to investigate gene function and phenotypic diversification. Our findings highlight the prevalent role of transcription factors and tandem gene duplications in morphological evolution. We identified a specific role for the transcriptional regulators PLETHORA5/7 in shaping leaf diversity and link tandem gene duplication with differential gene expression in the explosive seed pod of C. hirsuta. Our work highlights the value of comparative approaches in genetically tractable species to understand the genetic basis for evolutionary change.

Indexed as

Evolution, MolecularGene Expression Regulation, PlantGenome, PlantBiological EvolutionCardamineGene DuplicationPhylogenyPlant ProteinsTranscription FactorsPlant ProteinsTranscription Factors

Identifiers

PMID27797353
PMCPMC8826541

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.