Evidence map›Paper›PMID 27795404›Full record

ArticlemBio2016

Quorum Quenching of Nitrobacter winogradskyi Suggests that Quorum Sensing Regulates Fluxes of Nitrogen Oxide(s) during Nitrification.

Brett L Mellbye, Andrew T Giguere, Peter J Bottomley, Luis A Sayavedra-Soto

Open access · goldAbstract read
In one paragraph

Article in mBio, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 67 citations in OpenAlex.

  1. Article
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  10. Review
  11. Low yield and abiotic origin of NNature communications · 2019
    Article
  12. Article
  13. An aryl-homoserine lactone quorum-sensing signal produced by a dimorphic prosthecate bacterium.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Draft Genome Sequence ofGenome announcements · 2017
    Article
  19. Genomic Analysis of Two Phylogenetically DistinctFrontiers in microbiology · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Brett L MellbyeDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, USA mellbyeb@science.oregonstate.edu sayavedl@science.oregonstate.edu.ORCID 0000-0002-3586-1885
Andrew T GiguereDepartment of Crop and Soil Science, Oregon State University, Corvallis, Oregon, USA.
Peter J BottomleyDepartment of Crop and Soil Science, Oregon State University, Corvallis, Oregon, USA.
Luis A Sayavedra-SotoDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, USA mellbyeb@science.oregonstate.edu sayavedl@science.oregonstate.edu.
Oregon State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Quorum sensing (QS) is a widespread process in bacteria used to coordinate gene expression with cell density, diffusion dynamics, and spatial distribution through the production of diffusible chemical signals. To date, most studies on QS have focused on model bacteria that are amenable to genetic manipulation and capable of high growth rates, but many environmentally important bacteria have been overlooked. For example, representatives of proteobacteria that participate in nitrification, the aerobic oxidation of ammonia to nitrate via nitrite, produce QS signals called acyl-homoserine lactones (AHLs). Nitrification emits nitrogen oxide gases (NO, NO IMPORTANCE: Bacterial cell-cell signaling, or quorum sensing (QS), is a method of bacterial communication and gene regulation that is well studied in bacteria. However, little is known about the purpose of QS in many environmentally important bacteria. Here, we demonstrate quorum quenching coupled with mRNA-Seq to identify QS-controlled genes and phenotypes in Nitrobacter winogradskyi, a nitrite-oxidizing bacterium. Nitrite oxidizers play an important role in the nitrogen cycle though their participation in nitrification, the aerobic oxidation of ammonia to nitrate via nitrite. Our quorum quenching approach revealed that QS influences production and consumption of environmentally important nitrogen oxide gases (NO, NO

Indexed as

NitrificationQuorum SensingAcyl-ButyrolactonesAerobiosisBiotransformationGene Expression ProfilingNitrobacterNitrogen OxidesSequence Analysis, RNAAcyl-ButyrolactonesNitrogen Oxides

Identifiers

PMID27795404
PMCPMC5080386
OpenAlexW2533706076

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.